XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAA
ATTACCAAACTCAAATGTAGAGAAATACTTTTGAAATATGTACAACATCC
TTAGCCATCAGGGAAATATAAATCAAAATGTCTTATACCTGTCAGGATGG
CTAAGATCAATAAAACCAATGACAGCTCAGCCAGATGAGGCTGTGGAATA
GGGGAAACACTCCTCTATTGCTGGTGGGAGGGCAAATTGATACGGCCACA
GTGGAAATCAATATGGCAGTTCCTTATGAAGATGGGAATCAATCTACCTC
AAAATCCTGCTATATCACTCTTGGGCATATACCCAAAGGAGCTCCATCCT
ACTGCAAGGACACTTGCTTAACCATGTTCACTGATGCTCTGTTCTTAATA
GCCAGAAACTGGAAACAATTCACATGTAACTCAAGAGAAAATTGGATAAG
GAAAACATGGTACATTTACATAACGGAGTGTTACTCAGCCTTTAAAAGAA
ATGAAATCATGAAGGTCACAGGTAAATGAATAGAACTCAAAAAATCATCC
TGGAGGAGGTAGCCCAAATCCAGAAAGATAAATATGGTATTTATTTGCTT
ATGTGTGGACATCTGCTGTTAAGTCAATGATAACTAAGCTACAATCTGGA
GGTTAAGTATAGGGTAAAGGAGCAGATATGTATAGAAGGGAAATAGAAGA
AGTATGGACAGATTATGGGGCTGAAATAGGAGGATC

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTGGAACCAGTGGTGTTCACTGAGTACCTCTGAGA
TCCAGTCTGTCTGCTTGGAGCTGAAGAGGGATCAGCAGAAGCCAAGTGTT
TGCTCTGTTCACTCACCGATATGGTGTCAGGACCAAACCTCAAAAGATCC
ATACAAGTTTGGGAAAGCAATAGGGTAAGTTTTATTCCGATGTGATGAAT
AAGAGGACATCGGATAGGGGAAGTTGGAAGGTGAAAAACACTTCAAATGA
GAAATAATGGAGTCTTAAAGAATGAGTAAGACTTTATAATGAGTTTTAGA
CCAATATCCTCCCTCATATCCTATTTTGATTTCTTGTCACAACTCTAAAT
TTTAGGGGTCTCTTAAGGCTATGATTCTACGAATACAATTTAGTCAATGT
GAAGGTGAATACTGCTAGATAAATCTTTCAAAGCTGGAAAATCTTATGTG
CATGTTTCCCATATTGCTCCAATCTTTATAAAATTAGTTGTGATGCTTGG
CCTCTTTCTTTAAGCTTTAAGTTTCTGTCTTTAGATAACTATACCTATGT
ATGTATGCAGAATATAAATTGACACAGTCATATATGTATGCACATATATG
ATCACTCTAGTTTCAGCACCTTGCAAAAATTATATATTAGTATAAATAAA
TAGAACTTAATAATGGGTTCAATAATTGTCGAGTCACCCT

Query= MSMg01no478_f04.g1 MSMg01no478_f04.g1 CHROMAT_FILE:
MSMg01no478_f04.g1 PHD_FILE: MSMg01no478_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:01 2005
         (649 letters)



>mm_chr1_24907227_24908275
          Length = 1049

 Score = 1174 bits (607), Expect = 0.0
 Identities = 636/649 (97%), Gaps = 6/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggaaccagtggtgttcactgagtacctctgagatccagtctgtctgcttggagctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 agtggaaccagtggtgttcactgagtacctctgagatccagtctgtctgcttggagctga 832

                                                                       
Query: 61  agagggatcagcagaagccaagtgtttgctctgttcactcaccgatatggtgtcaggacc 120
           |||||||||||||||||||||      ||||| ||||||||||| |||||||||||||||
Sbjct: 831 agagggatcagcagaagccaa------gctctattcactcaccgctatggtgtcaggacc 778

                                                                       
Query: 121 aaacctcaaaagatccatacaagtttgggaaagcaatagggtaagttttattccgatgtg 180
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aaacctcaaaagattcatgcaagtttgggaaagcaatagggtaagttttattccgatgtg 718

                                                                       
Query: 181 atgaataagaggacatcggataggggaagttggaaggtgaaaaacacttcaaatgagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atgaataagaggacatcggataggggaagttggaaggtgaaaaacacttcaaatgagaaa 658

                                                                       
Query: 241 taatggagtcttaaagaatgagtaagactttataatgagttttagaccaatatcctccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taatggagtcttaaagaatgagtaagactttataatgagttttagaccaatatcctccct 598

                                                                       
Query: 301 catatcctattttgatttcttgtcacaactctaaattttaggggtctcttaaggctatga 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 597 catatcctattttgatttcttgtcacaactctaaattttaggggtttcttaaggctatga 538

                                                                       
Query: 361 ttctacgaatacaatttagtcaatgtgaaggtgaatactgctagataaatctttcaaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttctacgaatacaatttagtcaatgtgaaggtgaatactgctagataaatctttcaaagc 478

                                                                       
Query: 421 tggaaaatcttatgtgcatgtttcccatattgctccaatctttataaaattagttgtgat 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tggaaaatcttatgtgcatatttcccatattgctccaatctttataaaattagttgtgat 418

                                                                       
Query: 481 gcttggcctctttctttaagctttaagtttctgtctttagataactatacctatgtatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcttggcctctttctttaagctttaagtttctgtctttagataactatacctatgtatgt 358

                                                                       
Query: 541 atgcagaatataaattgacacagtcatatatgtatgcacatatatgatcactctagtttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atgcagaatataaattgacacagtcatatatgtatgcacatatatgatcactctagtttc 298

                                                            
Query: 601 agcaccttgcaaaaattatatattagtataaataaatagaacttaataa 649
           ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 297 agcaccttgcaaaaattatatattagtataagtaaatagaacttaataa 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)