BAC Information

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BAC

Clone NameMSMg01-478M16
Chromosome1 (Build37)
Map Location 42,582,010 - 42,582,248
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478M16.T7 (MSMg01no478_m16.b1)MSMg01-478M16.TJ (MSMg01no478_m16.g1)
ACCAG559824AG559825
length725734
length of high quality
(start - end)
49 (418 - 466)239 (65 - 303)
definitionCHROMAT_FILE: MSMg01no478_m16.b1 PHD_FILE: MSMg01no478_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:35 2005CHROMAT_FILE: MSMg01no478_m16.g1 PHD_FILE: MSMg01no478_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCGGCGCGGAACGAGGAGATTTTCGGAGTCGAGGNGGGGAANGCNCGC
TTTCAGCGATGTGGGAGGGCACNGAAAGGGAAACGGCCGNGGAAGGGGAG
GAGGGGACGCCGCCCCGGCAAGNAGNCGGGAGGGAGGCCCGAGGGACAAC
GNGGGGGGGGGGGGGGGGNNNGGCCCGGCCCAAGCGGGGGGCACCCCGGG
GGAGGCCCCGAAAGNAAAACAAAAGGGGCNNNCAGTGTTTTGCCCACCCC
CGGGGCACANCCNAANAGGAGAGCNNCCAGGGCAGCAGCAAAAGGCCNCC
GTTTTTTTTTTTCCCGAGAACAAAACCCCTGGNGAAGCCGGGAAAGGCTG
AACAACAAGCTAAGGCAGGGCTTGGCACAGCTCCAGAGCCTTCCTACCAA
GTCCATGGTATAGTGGGGGCAGGGCTTGGGAACAGATAGGAAAAAAAAAA
ATAGAAATAAAAGAACAATCACTTTCTCTTTTAGAAATAGTGTAGTTTTA
GACAAACTAGAAACCGGTAATATCCAGAGGACAAGAAGCAGGAGTGGCTG
GCCCCAGGTCTGATGGATCTGTGGGTCACTTGGTCTGAGTTTTAGGATTT
CTCAATAAAGGAGAGGACCGAGCTCTCCCCAAGTATTATTTTTACGGATC
CTTATACCTGCCCCTATTCCAGAAGGGCCATAAGATGGGGGAAGGGAAGG
ATCCGCCTCTCGGGGGACTGGGTTG
GGGAGGCCTGGNGGGCGCCAGTTCAAAACAGGGGGGTGACCTATAGAATG
CCCCGCGGAGGTCTAGACATAGGGCTTCTTAGTGCTTCTAGTAATGATGA
ATAGAGGCCATAGGTAGGCAGGGCAGCTTTGGATGCACGGCCTGGACAAG
AGCTTCCTGAACCTCATTGGCTTGACAAAGAGGAGAGATGGGGAGCATGC
AGTTAGACCCAGAGAGGGACTACAGCAGTTTCCAGTGCTTCGCTGCACTG
TCATAGCTGCAGCTTAGAATCTTTTAATCTGTGCCTGCCATCTTGGAAGT
CTTGTTTTGCTCTGTGTTCCAGGTTACTGTGCATGTGCAAGCTGATGGGC
AGGCCAGCAGCAGCATGATGTTACTAGCAGCAGAAACACGACCTGGCATC
CTTAGCAGATAGTCAGGAAGCAGTCCACACACCTTGGTGACTTGCTATGA
ATGTAGTCACTCTATTGCCCACCTGCTAGAGTACGTGGCGGGTTGGGGTT
TCCCCTTGCTAATTGAAATGTGCCACCATGGGGTTTATGCATAATAAGCC
AAGAATGCTAAAGCTTGCTACACAGTTTGGGGTAAGTTTCCCCTTGTAAC
CCACTGGCTGCTGAAAAAAGATGTTAATTTGGCTTTATAAGTCCGGGGGT
CAGCTCTAAAATGGATGTCTCCTTCAAATCCCTCCCCTCAGATCTCTGGG
AACATGGAGGCATAAGGTATTTGGGTAACCATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_m16.g1 MSMg01no478_m16.g1 CHROMAT_FILE:
MSMg01no478_m16.g1 PHD_FILE: MSMg01no478_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:35 2005
         (239 letters)



>mm_chr1_42581810_42582448
          Length = 639

 Score =  408 bits (211), Expect = e-118
 Identities = 232/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacatagggcttcttagtgcttctagtaatgatgaatagaggccataggtaggcagggc 60
           ||||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 201 agacagagggcttctcagtgcttctagtactgatgaatagaggccataggcaggcagggc 260

                                                                       
Query: 61  agctttggatgcacggcctggacaagagcttcctgaacctcattggcttgacaaagagga 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttcggatgcacggcctggacaagagcttcctgaacctcattggcttgacaaagagga 320

                                                                       
Query: 121 gagatggggagcatgcagttagacccagagagggactacagcagtttccagtgcttcgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatggggagcatgcagttagacccagagagggactacagcagtttccagtgcttcgct 380

                                                                      
Query: 181 gcactgtcatagctgcagcttagaatcttttaatctgtgcctgccatcttggaagtctt 239
           |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gcactgtcatggctgcagcttagaatcttttaatctgtgcctgccatcttagaagtctt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)