Query= MSMg01no478_m20.b1 MSMg01no478_m20.b1 CHROMAT_FILE:
MSMg01no478_m20.b1 PHD_FILE: MSMg01no478_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:36 2005
(670 letters)
>mm_chr1_64820012_64821082
Length = 1071
Score = 1220 bits (631), Expect = 0.0
Identities = 661/671 (98%), Gaps = 1/671 (0%)
Strand = Plus / Plus
Query: 1 ggtccatagggagagtggccatccttctggctgcttctctcctagaattctcaaaatggc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtccacagggagagtggccatccttctggctgcttctctcctagaattctcaaaatggc 260
Query: 61 tgtgagttggtagtgatttggtatgggccatagtacctctgctttcttggcctggccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgagttggtagtgatttggtatgggccatagtacctctgctttcttggcctggccagg 320
Query: 121 ggatgggagagactttctgtttgatgttcacacaatgggatgtgttcactaagtctttgc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ggatgggagagactttctgtttgatggtcacacaatgggatgtgttcactaagtctttgc 380
Query: 181 taggtgctcagatgtgcagcctgcatgaatcctcaccaccccacgttaccatgactgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggtgctcagatgtgcagcctgcatgaatcctcaccaccccacgttaccatgactgtgt 440
Query: 241 ttttattttttctgacgaggccagtgggactcagcacagcagccggagctgactttaact 300
||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ttttagtttttcagacgaggccagtgggactcagcacagcagctggagctgactttaact 500
Query: 301 cccagggtggcagctgctggtgagcagcagccacatcttcttgcagtcccgaaacaagtc 360
| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 501 cgcagggtggcagctgctggtgagcagtagccacatattcttgcagtcccgaaacaagtc 560
Query: 361 tatcctttcgacgataacaatttaaaatagcatatgaaaaaaataaaataaaacaagata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatcctttcgacgataacaatttaaaatagcatatgaaaaaaataaaataaaacaagata 620
Query: 421 gcgtacggacgtacaattcaaatgctatagagattttctcctttttgccactcgatggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgtacggacgtacaattcaaatgctatagagattttctcctttttgccactcgatggct 680
Query: 481 cattttaaaggcaagaaggctgaaggaggctccattcctgttctgtgctttgtgtgcaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattttaaaggcaagaaggctgaaggaggctccattcctgttctgtgctttgtgtgcaca 740
Query: 541 gttctctaagtttgttgtggtatcagctgacccgcctgccctcaactttgaaattgtcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttctctaagtttgttgtggtatcagctgacccgcctgccctcaactttgaaattgtcct 800
Query: 601 caaatgatctcctgcttttatggatatcagctatcgatgtccttgaggaatgaa-ctatg 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 801 caaatgatctcctgcttttatggatatcagctatcgatgtccttgaggaatgaaactatg 860
Query: 660 taccctgagag 670
||||| |||||
Sbjct: 861 taccccgagag 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_m20.g1 MSMg01no478_m20.g1 CHROMAT_FILE:
MSMg01no478_m20.g1 PHD_FILE: MSMg01no478_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:36 2005
(588 letters)
>mm_chr1_64973242_64974232
Length = 991
Score = 866 bits (448), Expect = 0.0
Identities = 475/486 (97%), Gaps = 5/486 (1%)
Strand = Plus / Minus
Query: 1 ttagcaggaaatacaggaaggtgatgtgatagaggagagctgagatcagttctctaattt 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 486 ttagcaggaaatacaggaaggtgatgtgatagaggagagttgagaacagttctctaattt 427
Query: 61 gagtgtaaggtgtagtctcactaaggaggtgaaaatggaggtaaggtagagaagggtggg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 426 gagtgtaaggtgtagtctcactaaggaggtgaaaatggaggtagggtagagaagggtggg 367
Query: 121 tagtacataaagcactggaaagtgt---agggggggttagatcgagtatgagaaagggtg 177
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 366 tagtacataaagcactggaaagtgtgtgtgggggggttagatcgagtatgagaaagggtg 307
Query: 178 agagaccttacagacatatcaggacagacagtgccctcagaacatgggttattaatgtgc 237
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 306 agagaccttacagacatatcaggacagacaataccctcagaacatgggttattaatgtgc 247
Query: 238 gattgtgaaaataacatgaatttgaaagttcccatttttgtcatctggtggtggtggcac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gattgtgaaaataacatgaatttgaaagttcccatttttgtcatctggtggtggtggcac 187
Query: 298 aggcctttaattccagcacttgggaggcagaggcaggtagaactctgagttcaaggctag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aggcctttaattccagcacttgggaggcagaggcaggtagaactctgagttcaaggctag 127
Query: 358 cctggtctacagtcaaggttacatagacaaaccctgtctc--aaaaaaattctgatcatt 415
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 126 cctggtctacagtcaaggttacatagacaaaccctgtctcaaaaaaaaattctgatcatt 67
Query: 416 taaatagagatacatctatagttgaaatggtataatgcctttaatttacttcagacattc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 taaatagagatacatctatagttgaaatggtataatgcctttaatttacttcagacattc 7
Query: 476 taggaa 481
||||||
Sbjct: 6 taggaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 991
Length adjustment: 10
Effective length of query: 578
Effective length of database: 981
Effective search space: 567018
Effective search space used: 567018
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
