BAC Information

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BAC

Clone NameMSMg01-479C08
Chromosome1 (Build37)
Map Location 105,970,775 - 106,139,648
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479C08.T7 (MSMg01no479_c08.b1)MSMg01-479C08.TJ (MSMg01no479_c08.g1)
ACCAG560095AG560096
length767754
length of high quality
(start - end)		627 (51 - 677)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no479_c08.b1 PHD_FILE: MSMg01no479_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:02 2005CHROMAT_FILE: MSMg01no479_c08.g1 PHD_FILE: MSMg01no479_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,139,175 - 106,139,648)(105,970,775 - 105,971,019)
sequence
CCTGTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATTTTCATAGTCTGTGTACTTTGGCAGTGTTTTCTCT
ATGTTAATTACCATCTGCCAAGAAAAGACGTTTCTCTGATAAGGGTTAAG
AGATGCTCTTAATCTATGGGTCTAGCAATAAACCCTTAAGAAATAGATTA
AAACTATGTCCATTTATCAGGGTAGTAATAGTAAGTTCTTCATTAGGGCT
TATAAACTGTGTAGTAATAGGTTCATTATTTAGAATCTAGACTGTAGATA
ATGCAGTTAGATAAGGGTTTCATAGTGTTCAACAAGACTTTAACCCAATC
AAAAAGTGGTTTATTACTTCTGTGATGTTCATGCCCCATAACATCATTGA
ACATGCTACGCCATTACTCTTCAGTACTCTGCATAAGAGGTTGTAATTTC
ATATTTGGCATAGACTGATGGCTACTTTCCACTTCTGGTAGTTTTCACAG
CATTTCTATCACTGTGAAAGACAGCCATAAAAATGAAGATTTCATGTAAG
CACCAGTATAATTTTTCCATGTTATAACAACTCAAGTATGTTATGTTTAG
CTTTTAAATGTTATAAATAAGTTCTGTGAGGTAGATAAAAGCATTGGTAA
ACCCTGAAATGTATGGGAGTCTAGGGCTTCTCAATGGCTAACAACTCAAG
AAGAGGTAACTCATTCTTGGTTCTGGGATTTGATTCATTGTCACTGGTGT
ATAGTAGTGGTCATCAN

NNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTACATGGAACAATTAATA
AAATGTTTTGCACAGAATATTCATATCAAAAATAAGATAAAAGTGAGCTA
TACCAATTTGAATAAACAAATTACTTGAAGCAATTCATAAAATATTTACC
CTACAAGGCAATTATCTCTGTGCCATTTTTTGGATTTCACTGCCGTAATA
CAGACACCCAATTTTTCTACAGTTTCTTTACAATTTATTTCTATTACTAT
TCATTACAAGTGTATCCAAAACATATATTATAATCATGCTTATATTTTCT
TTTTTTCTTTTACTTCACCCATATATATGTATGTATATGTATATATATGT
NATATATGTGTGTGTGCACACACGCGTGTGTATAATCAATAATATTTTAT
GTTTTTTCTCTGTTAATCAGCTCTTGTATTAATTGTGCTTCTAGATCCAA
TAAAAGACACTCACATAAGAACTAATGATAGATGGAGAGGATCTTTCAAA
ATCAGACACAAATTAAATATTATTTTAACTTAAAATATAATTCTCTGTGT
TTTAGGTAACTACTGTGTAGATTATTAACCAAATGAAGTAAAAAACTATG
CCCAAATGCATCTTTCTTTTATTATGGGCTCTCCACCAACCCCTAATGTA
AAATCATTTTTTGTACAATCTGTTTCTAATGCACCTTACCAGTTTTTTAC
CAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_c08.b1 MSMg01no479_c08.b1 CHROMAT_FILE:
MSMg01no479_c08.b1 PHD_FILE: MSMg01no479_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:02 2005
         (627 letters)



>mm_chr1_106138622_106139648
          Length = 1027

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/474 (98%)
 Strand = Plus / Minus

                                                                        
Query: 151  aaactatgtccatttatcagggtagtaatagtaagttcttcattagggcttataaactgt 210
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1027 aaactatgtccatttatcagggtagtaatagtaagttcttcattaggtcttataaactgt 968

                                                                        
Query: 211  gtagtaataggttcattatttagaatctagactgtagataatgcagttagataagggttt 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  gtagtaataggttcattatttagaatctagactgtagataatgcagttagataagggttt 908

                                                                        
Query: 271  catagtgttcaacaagactttaacccaatcaaaaagtggtttattacttctgtgatgttc 330
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  caaagtgttcaacaagactttaacccaatcaaaaagtggtttattacttctgtgatgttc 848

                                                                        
Query: 331  atgccccataacatcattgaacatgctacgccattactcttcagtactctgcataagagg 390
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 847  atgccccataacatcattgaacatgctacgccattacttttcagtactctgcataagagg 788

                                                                        
Query: 391  ttgtaatttcatatttggcatagactgatggctactttccacttctggtagttttcacag 450
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 787  ttgtaatttcatatttggcatagactgatggctactttctacttctggtagttttcacag 728

                                                                        
Query: 451  catttctatcactgtgaaagacagccataaaaatgaagatttcatgtaagcaccagtata 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  catttctatcactgtgaaagacagccataaaaatgaagatttcatgtaagcaccagtata 668

                                                                        
Query: 511  atttttccatgttataacaactcaagtatgttatgtttagcttttaaatgttataaataa 570
            ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 667  atttttccatgttataataactcaagtatgttatgtttatcttttaaatgttataaataa 608

                                                                  
Query: 571  gttctgtgaggtagataaaagcattggtaaaccctgaaatgtatgggagtctag 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607  gttctgtgaggtagataaaagcattggtaaaccctgaaatgtatgggagtctag 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no479_c08.g1 MSMg01no479_c08.g1 CHROMAT_FILE:
MSMg01no479_c08.g1 PHD_FILE: MSMg01no479_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:02 2005
         (245 letters)



>mm_chr1_105970575_105971219
          Length = 645

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctacatggaacaattaataaaatgttttgcacagaatattcatatcaaaaataagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ccctacatggaacaattaataaaatgttttgcacagaatattcatatgaaaaataagata 260

                                                                       
Query: 61  aaagtgagctataccaatttgaataaacaaattacttgaagcaattcataaaatatttac 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 261 aaagtgagctataccaatttgaataaacaaattacttgaaacaattcataaaaaatttac 320

                                                                       
Query: 121 cctacaaggcaattatctctgtgccattttttggatttcactgccgtaatacagacaccc 180
           |||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 321 cctacaaggcaagtatctctgtgccattttttggatttcactaacgtaatacagacaccc 380

                                                                       
Query: 181 aatttttctacagtttctttacaatttatttctattactattcattacaagtgtatccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttttctacagtttctttacaatttatttctattactattcattacaagtgtatccaa 440

                
Query: 241 aacat 245
           |||||
Sbjct: 441 aacat 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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