BAC Information

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BAC

Clone NameMSMg01-479C24
Chromosome1 (Build37)
Map Location 68,809,234 - 68,979,637
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479C24.T7 (MSMg01no479_c24.b1)MSMg01-479C24.TJ (MSMg01no479_c24.g1)
ACCAG560127AG560128
length803814
length of high quality
(start - end)		595 (43 - 637)470 (75 - 544)
definitionCHROMAT_FILE: MSMg01no479_c24.b1 PHD_FILE: MSMg01no479_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:05 2005CHROMAT_FILE: MSMg01no479_c24.g1 PHD_FILE: MSMg01no479_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,809,234 - 68,809,824)(68,979,168 - 68,979,637)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACACAAATTATCATCATTTACAAGAACTGCTTGCCTAATTATCATGCA
CTAGAATAACAATTACGCATATCATTAAATTCCTGTGAGATAATCTTCAG
TATAAGTTTTATTTGATTAGGCCACTAAAGTCTGTTCATGCATGCTTAGC
CTTCATAGTGAGTTGCTCACGACGAATGGTTTTAAAACATAATGATAGCG
ATATTGGCTGCAACTCTAAAACACCGCCCCCCGTCCCCCCAAAAATATAT
TGCCCTGGTTATCCACCTTGTGAAAGGTTAGAGCAATCAAATGTGGGCTG
AATACAATCATACTTTCATATATCAAATATAAATAAAATGGAAAACCATA
GTTAGTGTTTTAGGCTTCCTAATTTGCACATTCTAACTAAGAAGATATCT
GGGCTGATAGTGTAAAGCATACATGCCAATTGTAATACCTATCATACATC
TCCATTCAGAAGTAAAAACAAAAATCAAAACAAAAAAGATTATGGCAATT
TGAAATAAAACTTATTTCAAAATGAGCCTCTGTTCTTGAGCCCCCTCATC
TGGTGAATAACCACCAAGATCAGATAGCTTCACCGGGCAGAGCCCGAATT
ATTTCTGCTTATACCGTTCTCACTGCACCACCAGCAAATCCTTCAATTCA
TTGTTATTTAATATCCCAAAGAGCTTCCAAGGCTTCAGTTCTCAACATAA
ACTGTTATTCTTTATTTGCATCTACGCCACTATTATTTTTTTCTAGATTG
CTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAACTCTAATGTGCAACCATAATTTT
GAGAGAGATGGGTTAGGCTTGGGGCATCACTCAGAAGAAAATAGCTATCT
TCTAAAGTTTAGGGAAAGTGAGGGGGTTGCTTATAAATTATAGGAAAACA
CATACATTCACATGTTTTGGGTACTTAAAAGAAAAGTAGAGGCTGTTTGT
CATAAGCTGGTTTTGGTGATTTAAATCACAATTGATTTTGCATTAAATCC
TGTTAATTTGTTCATCAGATCCTTAGTATAATAGAAATACCATTATAATA
TACCAAGGCTCATTGGTGAGCTAAACCCTAAAAGTTTTCATAGTTTAAAT
TAAGGAAAGAGTTTCTGTGGGAAAATATCATTCCAGATGAGTGATCATGT
GCTATTTGTTGTTCTTCGGGGGTCATTGGCTTAAATAGGCTATAAGCAAT
GTTGGAGAAGTGGAAGAAAAAAAGGATATTATGTATGTATGTATGGTATG
TATGTATGTAATGNATATATGNANNGNNNNNNNNNNNTNNNNNNNNNTNN
NNTNNNNTNTTTNNTTTTTTNTNNTNTTTTTTTTTTTTTTTTTTTTTTTT
NTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTNNNTNTTTTTTTTTNT
TTTTTTTTTTTTTTTNTTNNTTTNTTTTTTTTTTTTNNNTTNTTTTTTTT
TTTTTTTTTTTCCTTTTTTTNTTTTTTTTTTTTTTTTTNTNTTTNTTTTT
TTTTTTTTTNTNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_c24.b1 MSMg01no479_c24.b1 CHROMAT_FILE:
MSMg01no479_c24.b1 PHD_FILE: MSMg01no479_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:05 2005
         (595 letters)



>mm_chr1_68809030_68810024
          Length = 995

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacacaaattatcatcatttacaagaactgcttgcctaattatcatgcactagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacaaattatcatcatttacaagaactgcttgcctaattatcatgcactagaa 264

                                                                       
Query: 65  taacaattacgcatatcattaaattcctgtgagataatcttcagtataagttttatttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taacaattacgcatatcattaaattcctgtgagataatcttcagtataagttttatttga 324

                                                                       
Query: 125 ttaggccactaaagtctgttcatgcatgcttagccttcatagtgagttgctcacgacgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaggccactaaagtctgttcatgcatgcttagccttcatagtgagttgctcacgacgaa 384

                                                                       
Query: 185 tggttttaaaacataatgatagcgatattggctgcaactctaaaacaccgccccccgtcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggttttaaaacataatgatagcgatattggctgcaactctaaaacaccgccccccgtcc 444

                                                                       
Query: 245 ccccaaaaatatattgccctggttatccaccttgtgaaaggttagagcaatcaaatgtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccccaaaaatatattgccctggttatccaccttgtgaaaggttagagcaatcaaatgtgg 504

                                                                       
Query: 305 gctgaatacaatcatactttcatatatcaaatataaataaaatggaaaaccatagttagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgaatacaatcatactttcatatatcaaatataaataaaatggaaaaccatagttagt 564

                                                                       
Query: 365 gttttaggcttcctaatttgcacattctaactaagaagatatctgggctgatagtgtaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttttaggcttcctaatttgcacattctaactaagaagatatctgggctgatagtgtaaa 624

                                                                       
Query: 425 gcatacatgccaattgtaatacctatcatacatctccattcagaagtaaaaacaaaaatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcatacatgccaattgtaatacctatcatacatctccattcagaagtaaaaacaaaaatc 684

                                                                       
Query: 485 aaaacaaaaaagattatggcaatttgaaataaaacttatttcaaaatgagcctctgttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaacaaaaaagattatggcaatttgaaataaaacttatttcaaaatgagcctctgttct 744

                                                              
Query: 545 tgagccccctcatctggtgaataaccaccaagatcagatagcttcaccggg 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgagccccctcatctggtgaataaccaccaagatcagatagcttcaccggg 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no479_c24.g1 MSMg01no479_c24.g1 CHROMAT_FILE:
MSMg01no479_c24.g1 PHD_FILE: MSMg01no479_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:05 2005
         (470 letters)



>mm_chr1_68978968_68979837
          Length = 870

 Score =  909 bits (470), Expect = 0.0
 Identities = 470/470 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactctaatgtgcaaccataattttgagagagatgggttaggcttggggcatcactcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 caactctaatgtgcaaccataattttgagagagatgggttaggcttggggcatcactcag 611

                                                                       
Query: 61  aagaaaatagctatcttctaaagtttagggaaagtgagggggttgcttataaattatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aagaaaatagctatcttctaaagtttagggaaagtgagggggttgcttataaattatagg 551

                                                                       
Query: 121 aaaacacatacattcacatgttttgggtacttaaaagaaaagtagaggctgtttgtcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaaacacatacattcacatgttttgggtacttaaaagaaaagtagaggctgtttgtcata 491

                                                                       
Query: 181 agctggttttggtgatttaaatcacaattgattttgcattaaatcctgttaatttgttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agctggttttggtgatttaaatcacaattgattttgcattaaatcctgttaatttgttca 431

                                                                       
Query: 241 tcagatccttagtataatagaaataccattataatataccaaggctcattggtgagctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcagatccttagtataatagaaataccattataatataccaaggctcattggtgagctaa 371

                                                                       
Query: 301 accctaaaagttttcatagtttaaattaaggaaagagtttctgtgggaaaatatcattcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 accctaaaagttttcatagtttaaattaaggaaagagtttctgtgggaaaatatcattcc 311

                                                                       
Query: 361 agatgagtgatcatgtgctatttgttgttcttcgggggtcattggcttaaataggctata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agatgagtgatcatgtgctatttgttgttcttcgggggtcattggcttaaataggctata 251

                                                             
Query: 421 agcaatgttggagaagtggaagaaaaaaaggatattatgtatgtatgtat 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agcaatgttggagaagtggaagaaaaaaaggatattatgtatgtatgtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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