Query= MSMg01no479_e01.b1 MSMg01no479_e01.b1 CHROMAT_FILE:
MSMg01no479_e01.b1 PHD_FILE: MSMg01no479_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:11 2005
(708 letters)
>mm_chr1_53581014_53582122
Length = 1109
Score = 1319 bits (682), Expect = 0.0
Identities = 700/708 (98%), Gaps = 5/708 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattgtcttaa---ctggaggaatgtggaataattggaaacttcagatggaaaa 60
||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcattgtc--aaaaactggaggaatgtggaataattggaaacttcggatggaaaa 261
Query: 61 cagtctggcaatagcaccttccttcccctcctttagctgagatgtgggccatatctgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagtctggcaatagcaccttccttcccctcctttagctgagatgtgggccatatctgtca 321
Query: 121 tggcagccgccaacacacagctaacagctggatggttccagacccactgtgggaagtcca 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 tggcagccgccaacacacagctaacagctggatggttccaaacccactgtgggaagtcca 381
Query: 181 tcctcttactacaaagtaaccatcagctggaaagtaattcagataagtaaccatcaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcctcttactacaaagtaaccatcagctggaaagtaattcagataagtaaccatcaagtc 441
Query: 241 tggttacagttttcaagaggcataatcctcaccctaaataagttattcttatatcaaaat 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggctacagttttcaagaggcataatcctcaccctaaataagttattcttatatcaaaat 501
Query: 301 gagtgggacagtgattcagtaacatcattatcacctaacatatgcagcccaccagagaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gagtgggacagtgattcagtaacatcattatcacctaacatatgcagcccaccagagaca 561
Query: 361 aaactgctaagagctttctttctcttttttaaaaggtacatctttaaagagtttctaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaactgctaagagctttctttctcttttttaaaaggtacatctttaaagagtttctaaaa 621
Query: 421 ataaaagacaatagatcccaaattccttgcaatttaaacaacaaaatagttgagtatatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ataaaagacaatagatcccaaattccttgcaatttaaacaacaaaatagttgagtatatt 681
Query: 481 tgtaaattaagccaaccttaaacatgatcattcttaagataccatgaatgctttaaccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgtaaattaagccaaccttaaacatgatcattcttaagataccatgaatgctttaaccaa 741
Query: 541 attcatttacatttctacagtactcacaatgatataaacactctttccagttcctgttgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 attcatttacatttctacagtactcacaatgatataaacactctttccagttcctgttgg 801
Query: 601 tcctacaaatattgaaggcttttgatgagtggtcagtaaattcattagagcagagtaacg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tcctacaaatattgaaggcttttgatgagtggtcagtaaattcattagagcagagtaacg 861
Query: 661 gatcgtatctagagttggcacaatgatctcattaaactgtacatcttt 708
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gatcgtatctagagttggcacaatgatctcattaaactgtacatcttt 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1109
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1099
Effective search space: 767102
Effective search space used: 767102
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no479_e01.g1 MSMg01no479_e01.g1 CHROMAT_FILE:
MSMg01no479_e01.g1 PHD_FILE: MSMg01no479_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:11 2005
(641 letters)
>mm_chr1_53776036_53777076
Length = 1041
Score = 930 bits (481), Expect = 0.0
Identities = 508/533 (95%), Gaps = 25/533 (4%)
Strand = Plus / Minus
Query: 134 gacaatgtacttttcaaggtgtaacttctttcttcctccccttctttctcctcttcacct 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gacaatgtacttttcaaggtgtaacttctttcttcctccccttctttctcctcttcacct 982
Query: 194 tcctcatctttcttcttctttttctggcagtaaggattgaatccaggggttcttataagc 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tcctcatctttcttcttctttttctggcagtaaggattgaatccaggggttcttataagc 922
Query: 254 aattctctaccagtgatctaatcccaagcaatttttaattttttaattttgagacagtgt 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 aattctctaccagtgatctaatcccaagcaatttttaattttttaattttgagacagtgt 862
Query: 314 cttaccaagttgcccaggctgactttgaactcattctgtgcccaggcaggccttacactt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cttaccaagttgcccaggctgactttgaactcattctgtgcccaggcaggccttacactt 802
Query: 374 gcaatcctcctggctcagcctcacaagtagctgggatgaaattcctgagacactagaccc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcaatcctcctggctcagcctcacaagtagctgggatgaaattcctgagacactagaccc 742
Query: 434 agcttgcatggtgttaacttctaacctgccttcattaccaaacacttgggacaagtgaac 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcttgcatggtgttaacttctaacctgccttcattaccaaacacttgggacaagtgaac 682
Query: 494 acaagtaagccaagagatacccatgcagcatggcaatggtgcac---------------- 537
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaagtaagccaagagatacccatgcagcatggcaatggtgcaccagtgtggggagccgc 622
Query: 538 ---------cgccattacaagatggcgctgacatcctgtgttctaagtagtaaacaaata 588
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcacattcgccattacaagatggcgctgacatcctgtgttctaagtagtaaacaaata 562
Query: 589 atctgcgcatgtgccagggtagttctccacttcatgtgctctgccttccctgt 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctgcgcatgtgccagggtagttctccacttcatgtgctctgccttccctgt 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
