AATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGATTTTCTTAAGCAAATGTATTCACCTGGAGGATATCATCCT
GAGGGAGGTCACCAATCACAAAAGTACACACATGATATGCACTCACTGAT
AAGTGGAGATTAGCCCAGAAACTTAGAATATCCAAGATACAATTTGAAAA
CACATGAAACTCAAGAAGAAAGAAGACCAAAGTGTGGATACTTCGTCCCT
TCTTAGAATGGAGAACAAAATACACATGGAAGGAGTTACAGAGACAAAGT
TTGGAGCTGAGATGGAATGATAGACCATCCAGAGACTGCCCCACCTGGGG
ATCTATCCCATGTACAACCACCAATCCCAGACACTATTGCATATGCCAGA
GAGATTTTGCTGAAAAAACCCTGATATAGCTGTCTCTGGTGAGGCTATGC
CAGTGCCTAGAAAATACAGAAGTGGATGCTCATAGTCATCTATTGGATGG
AACACAGGATCCCCAATGTAGGAGCTAAAGAAAGTACCCAAGGAGCTGAA
GGGTTCTGCAACCCTATAGGTGGAACAACAATATGAACTAACAAGTAACC
CCCATAAGACGATGGCCTAGTTGGTCATTATTGGGAAGAGAGGATCCTTG
GTGTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAA
GAGGGAGTTGGTGGGTAGGGGAGCAGGAAGGGTATAGGGGACTTTTGGGA

NCGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGTTTCTTCAGAAACCTCAT
TAAATACTAAATGGAATACATCTTGAAAATAAGTTAAAAGTCGAGTGTTA
TAATTAGAAGTGGGAATGTTATAAGCCAAATTGATTGAATCACAACAAAA
ATGTCACATTAGTCACATGAAGTATTCCTGTGTTTGCTAACTTTTTTTCT
TACATTTTCCCCCTAAGTTATAAGTTTCCAGATGATTTTCTAGACTTGAC
TACACAAATAGTGAATGGTATTTTTGGCCCTGTACAAAGATGCCATGAAG
AATCTCTTACCTACTCCAGCTAAATCTCACTATTTGTTCAACCTTCGCGA
TTTCTCCCGAGTCATACAAGGTGTTTGTTTGTCAAGACCAGAAACAGCAG
AAAACAAAGAGGCCATTAAACGCCTGTGGGTTCATGAGGTAAAATTCTGA
ATCATTCAAATGTGAGTACAGAAGAGCAAGGACTACTGTGGCAGTGACTG
AGTCAAAGACTTAGGGATGCTTGCTGTGAAGCCCATTAGGTACTTGGCAC
TAATTAGGCCATTGTGAAAGTACATTTTAAAGTATTTAATACCATAAATT
TTAAGGTACTTAATGTTTAATCTTGCATTTTGGCATACAGAGTATCCTGA
AGTATGAATTCATTTCAGCCCATTTCCTTTAAGCATGGTAACCCTCCCTA
GGTN

Query= MSMg01no479_h09.g1 MSMg01no479_h09.g1 CHROMAT_FILE:
MSMg01no479_h09.g1 PHD_FILE: MSMg01no479_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:28 2005
         (666 letters)



>mm_chr1_53575011_53576075
          Length = 1065

 Score = 1228 bits (635), Expect = 0.0
 Identities = 658/669 (98%), Gaps = 7/669 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaggtttcttcagaaacctcattaaatactaaatggaatacatcttgaaaataagtta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 865 caaaggtttcttcagaaacctcattaaatactaaatggaaaacatcttgaaaataagtta 806

                                                                       
Query: 61  aaagtcgagtgttataattagaagtgggaatgttataagccaaattgattgaatcacaac 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaagtcgagtattataattagaagtgggaatgttataagccaaattgattgaatcacaac 746

                                                                       
Query: 121 aaaaatgtcacattagtcacatgaagtattcctgtgtttgctaactttttttcttacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaaatgtcacattagtcacatgaagtattcctgtgtttgctaactttttttcttacatt 686

                                                                       
Query: 181 ttccccctaagttataagtttccagatgattttctagacttgactacacaaatagtgaat 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttcccctaagttataagtttccagatgattttctagacttgactacacaaatagtgaat 626

                                                                       
Query: 241 ggt---atttttggccctgtacaaagatgccatgaagaatctcttacctactccagctaa 297
           |||   |    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtacaa----tggccctgtacaaagatgccatgaagaatctcttacctactccagctaa 570

                                                                       
Query: 298 atctcactatttgttcaaccttcgcgatttctcccgagtcatacaaggtgtttgtttgtc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atctcactatttgttcaaccttcgcgatttctcccgagtcatacaaggtgtttgtttgtc 510

                                                                       
Query: 358 aagaccagaaacagcagaaaacaaagaggccattaaacgcctgtgggttcatgaggtaaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aagaccagaaacagcagaaaacaaagaggccattaaacgcctgtgggttcatgaggtaaa 450

                                                                       
Query: 418 attctgaatcattcaaatgtgagtacagaagagcaaggactactgtggcagtgactgagt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 attctgaatcattcaaatgtgagtacagaagagcaaggactactgtggcagtgactgagt 390

                                                                       
Query: 478 caaagacttagggatgcttgctgtgaagcccattaggtacttggcactaattaggccatt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caaagacttagggatgcttgctgtgaagcccattaggtacttggcactaattaggccatt 330

                                                                       
Query: 538 gtgaaagtacattttaaagtatttaataccataaattttaaggtacttaatgtttaatct 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtgaaagtacattttaaagtatttaataccataaattttaaggtacttaatgtttaatct 270

                                                                       
Query: 598 tgcattttggcatacagagtatcctgaagtatgaattcatttcagcccatttcctttaag 657
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 269 tgcattttggcatacagagtatcctgaagtatgaattcatttcagtccatttcctttaag 210

                    
Query: 658 catggtaac 666
           |||||||||
Sbjct: 209 catggtaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space:   692080
Effective search space used:   692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)