CGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCCATATTTCTTCTTTAGATGCTGTCTTCTTTTCAGTTTCT
TTATTCATTTGCTCAAGAAGTCCTATTGAGCAGATCTTGGAACTTCTGTG
ACATTTACATATTGTCATATTTTCCTCTTTTCTGTATTGTCCTTACTCCA
AACTCTGAGCTCAGGACTGAGGGATCTATCTTCAATCTGCTTTTATCTAC
TTTTGATATTTTTCTAGGACTGAGAGTAGCTTCTGGCTTGTGAGAAGTAG
TTCATTTTCTTCAGTTGCCTTCAGGAAATATTTTTTTTACTGTTCCTAAG
AATTGGGGCCAAAGGCTACACCAAGAAGCTTAGCAGTACAAACAGTGTTC
AATTTACTAAATTACATTTGTTTTGACTTTTGCAATGTAATAGCACACAT
CTGCTGTGAGAATTCAAGAGCAGAGCTGCCTGTGGCAAAGCAGGTTAAAC
AAATTTTGATGATGAACTTGAAGTGCCAATGAGTCTTACATTTGGAATAG
TGATATATCAGGACATGACTATCAGGAGAGTTAAGAGTGGACTAAATGGT
GCAGACNAAGGGGCTCTGTGGCCTGAAGTGGTGCTGGGTCAGGTGTGCAC
AATGACTGANAAGATATCAAGATGAATCTCTGAGATAGAGTTTGATTCTT
ATCAGTGGGAAAAAGCCTGATACTTGAGAGAGTTAGAGAAAGCTTGATCT
TTTNGAATTGCTGATGTGAATTGTGTATTATTTAGGAAAAGAAAGCAA

CACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTCCCTTTACAAGTCATATTT
GAACGAAATGACCTTGCTTGATTATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTTACTTACTTACTTATTTACAAGATACTAGTATTACATA
TTTTTTTTAAATCTCATTTTCAGTACTACATTAGGCTAAATTCTCTAGGA
GTAGTTTGGGGGGTGGGGGTGGGGGNNATNNNNTTTCTCTGCGTCTTGCC
CCCCCCTCGTTTCGCGGTGTTGTTTTTTTCGCTTTTCTCGTTCCGCGTCC
GTTGGGTGTGTCGTCGCCGTTTCGCCGCGTTTGGCCTTTGTCGGTTGTTG
TGTTTTTTTTGTGTTTTTTCCCCCGCCCCGCTTGGCTGTCGCGGCTCCCT
CTTTTTTTTTTTGCGTTCGTTGGATGTGTTCTTACTTTGTGTGGCGCGCT
TTCACTTTTATCTTTCGCGTTTTTTCCGCGTATCTTTATTTCGCCCCTTA
TTATTTCGCCTTTCTTTTTTTTTGCGTCGTCTTTTTCCGGAATTTATTTC
CTGGCCCCTTCGGCGCTTGATCTGCCTGATCCCTGCAGGGAGTTTGTTGC
CCATGCGTGTTGTGGTGCCACCCCTTTTCGCCCCCTTATTATATTTTTTT
GGGGCGGGGCGCTCGTTTATTTCCTCCGCGCGCTTTTGTCTCTTTATATC
CCATTTTTCCGTGTTGTGGTTTCTCTGGGGCGCGCGGGCGTCGTGTGTTT
GTTTTCCTGN

Query= MSMg01no479_o24.b1 MSMg01no479_o24.b1 CHROMAT_FILE:
MSMg01no479_o24.b1 PHD_FILE: MSMg01no479_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:06 2005
         (526 letters)



>mm_chr1_25189903_25190829
          Length = 927

 Score =  967 bits (500), Expect = 0.0
 Identities = 518/524 (98%), Gaps = 3/524 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccata-tttcttctttagatgctgtcttcttttcagtttctttattcatttg 63
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaattcttccatagtat-ttctttagatgctgtcttcttttcagtttctttattcatttg 669

                                                                       
Query: 64  ctcaagaagtcctattgagcagatcttggaacttctgtgacatttacatattgtcatatt 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 668 ctcaagaagtcctattgagcagatcttggaacttttgtgacatttacatattgtcatatt 609

                                                                       
Query: 124 ttcctcttttctgtattgtccttactccaaactctgagctcaggactgagggatctatct 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 608 ttcctcttttctgtattgtccttactctaaactctgagctcaggactgagggatctatct 549

                                                                       
Query: 184 tcaatctgcttttatctacttttgatatttttctaggactgagagtagcttctggcttgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tcaatctgcttttatctacttttgatatttttctaggactgagagtagcttctggcttgt 489

                                                                       
Query: 244 gagaagtagttcattttcttcagttgccttcaggaaata-ttttttttactgttcctaag 302
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 488 gagaagtagttcattttcttcagttgccttcaggaaatatttttttttactgttcctaag 429

                                                                       
Query: 303 aattggggccaaaggctacaccaagaagcttagcagtacaaacagtgttcaatttactaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aattggggccaaaggctacaccaagaagcttagcagtacaaacagtgttcaatttactaa 369

                                                                       
Query: 363 attacatttgttttgacttttgcaatgtaatagcacacatctgctgtgagaattcaagag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attacatttgttttgacttttgcaatgtaatagcacacatctgctgtgagaattcaagag 309

                                                                       
Query: 423 cagagctgcctgtggcaaagcaggttaaacaaattttgatgatgaacttgaagtgccaat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cagagctgcctgtggcaaagcaggttaaacaaattttgatgatgaacttgaagtgccaat 249

                                                       
Query: 483 gagtcttacatttggaatagtgatatatcaggacatgactatca 526
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gagtcttacatttggaatagtgatatatcaggacatgactatca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space:   473172
Effective search space used:   473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)