BAC Information

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BAC

Clone NameMSMg01-479P23
Chromosome1 (Build37)
Map Location 74,445,217 - 74,445,790
singlet/doubletsinglet
Overlap genenone
Upstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1
Downstream geneVil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479P23.T7 (MSMg01no479_p23.b1)MSMg01-479P23.TJ (MSMg01no479_p23.g1)
ACCAG560743AG560744
length797783
length of high quality
(start - end)		574 (72 - 645)596 (76 - 671)
definitionCHROMAT_FILE: MSMg01no479_p23.b1 PHD_FILE: MSMg01no479_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:11 2005CHROMAT_FILE: MSMg01no479_p23.g1 PHD_FILE: MSMg01no479_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCAAACACATTCCAAGAAAACAAAAGCCAACTATCAAGGGGGCC
TGGAGGGTCGAGAGACGTCAGTCAACAGGTGGATAACACTAGCTACCTCA
TGGCTGAGGATATGGACCACAGAAACAGTAAGTTATGAATCTTTCTGATT
TACCATCAGATTTTTCTTTTTCAGTACTGGGGATAACATTCCAGGCTTCA
GGCACGCGAGGCAAGTGTTCTACTAGTGTGCTGAACCTAGCCGCTTCTGA
AAGGGATTCTGACAATTATCAAAGGCTCCTGAAACTTATCTTACCTCTTT
CCTTAAATTTCAGGTTGCATGCACACCTGCACTCGCTATGCCTAACTTCC
TTTTTCTCTTTTTCTGACTTTCTTTTAATTAATTAATCATGCTTTAATTC
CAGAAATATTCCCAATGGGCCCCAGAGGGACTTACCCTCAGAGGCCTCTC
TGGAGTAACTAACACCAAAGAAACATTAACGACGTTCAGTAGTGGCAGCT
GATCCTAGAGAAAGAATACTCATATTTAAAAGTTACAAAGTATCGCCGGG
CGTGGTGGCACATGCCTTTAATCCCAACACTCGGGAGCCTGAGACAGGCG
GGATTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG
CCAGGGTTATACACAGAAACACTGTCTCGGGGAACCAAAAAACAAAAAAA
CCCCAAAGGTACGAACCATCTCTACATCACTCTTGGATTAATGACTN

TACGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGA
AACCCTGTCTCACAAAAACCTAAATAAATAAATCTTTCTCTTAATCTATT
TCTGGGGCTAAGGAGATGGCTTAGTGTATAAAACACTTGCCACACAAACG
TGAGAACTGGAATTTGGGTCCCGGGGCAGACAAGGCAGCCTACCCAACTG
GATTCCCAGTACGCAGGAGGCAGAGACAGGAGATCCCCACAGCGAGCTGG
CTAGCTAAGATTAGTCACATAGGTAATCTATGAGTTTATCTGAGGACACA
GGAGGACAACTGAGTTAAAGGCCCTTCCTCAGGTCAGGTATAGTGGCTCC
TATCTGCAATCCCAGTACTCTGGAGGCTAAAACAAGAGGATCTCCAGTTC
AAGGCCAGCGAGAGTAAGATAGGTACATGCATACATACATACATACATAC
ATACATACATACATACATACATACATAAAGTTTATACACACACACATAAA
GAGGAAATGTAGAGGAAGACACCTGTGTCAATCTCTGGCCTCCGCGCACA
CAAGATCACACATGTATACATGAAACCACACACACACATGTGTACCCGTA
CACATTTGAGCATGCATACACACATGCAGGTATACAACACACACATACAT
ACATCTGTCCATTTCCACCCTTCTACCCAGAGCAAGCTACATCAACTTCA
CCCCGGCAAACTAATTCACTATAGATTTCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_p23.b1 MSMg01no479_p23.b1 CHROMAT_FILE:
MSMg01no479_p23.b1 PHD_FILE: MSMg01no479_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:11 2005
         (574 letters)



>mm_chr1_74445068_74446041
          Length = 974

 Score = 1087 bits (562), Expect = 0.0
 Identities = 571/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaacaaaagccaactatcaagggggcctggagggtcgagagacgtcagtcaacaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaaaacaaaagccaactatcaagggggcctggagggtcgagagacgtcagtcaacaggtg 664

                                                                       
Query: 61  gataacactagctacctcatggctgaggatatggaccacagaaacagtaagttatgaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gataacactagctacctcatggctgaggatatggaccacagaaacagtaagttatgaatc 604

                                                                       
Query: 121 tttctgatttaccatcagatttttctttttcagtactggggataacattccaggcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tttctgatttaccatcagatttttctttttcagtactggggataacattccaggcttcag 544

                                                                       
Query: 181 gcacgcgaggcaagtgttctactagtgtgctgaacctagccgcttctgaaagggattctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gcacgcgaggcaagtgttctactagtgtgctgaacctagccgcttctgaaagggattctg 484

                                                                       
Query: 241 acaattatcaaaggctcctgaaacttatcttacctctttccttaaatttcaggttgcatg 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acaattatcaaaggctccagaaacttatcttacctctttccttaaatttcaggttgcatg 424

                                                                       
Query: 301 cacacctgcactcgctatgcctaacttcctttttctctttttctgactttcttttaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cacacctgcactcgctatgcctaacttcctttttctctttttctgactttcttttaatta 364

                                                                       
Query: 361 attaatcatgctttaattccagaaatattcccaatgggccccagagggacttaccctcag 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 363 attaatcatgctttaattccagaaatactcccaatgggccccagagggacttaccctcag 304

                                                                       
Query: 421 aggcctctctggagtaactaacaccaaagaaacattaacgacgttcagtagtggcagctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggcctctctggagtaactaacaccaaagaaacattaacgacgttcagtagtggcagctg 244

                                                                       
Query: 481 atcctagagaaagaatactcatatttaaaagttacaaagtatcgccgggcgtggtggcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atcctagagaaagaatactcatatttaaaagttacaaagtatcgccgggcgtggtggcac 184

                                             
Query: 541 atgcctttaatcccaacactcgggagcctgagac 574
           |||||||||||||||||||||||||| |||||||
Sbjct: 183 atgcctttaatcccaacactcgggaggctgagac 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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