NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACTGATTACGTATCTCTACATTGCCCCCCCCCCAATTTTTT
GGTCATAATTGTGATGTGAGGCTGATTAAAGATCATGACAGGTATAGGAT
CTTGGAACCCATGGACTTCAGTACACAGGTACCTCACTAATATGTCTCAC
TAAACCCCAACTACTTCTCTATATTTCTCCTCATGACAAAGATGTCTCCT
CCCTGAATTCTTCTCAGATAAAAAGATCACCCACACTCACCCAACTTTGT
GTCCTCTTCTCTAGGTTAACACATTCCAGTTCAAGGAGAGTTTTGGGGTA
GATGAGGAGAGGAAGACATAATATTTGGCTGTTGTTTTAGCCTAATCAAA
TGTCCACTTTCATCTATTCTCATAGAACAGCTATGTTTTTACTGCTATGA
ATTAGAACTTCTGTAGATTAGAGAACTCCAATGAAGACACCAAAATGAAG
TAATGCCACCTTAAGGAATGGAAAGGGTTCTTCTTGAAGAAGACAAAGAA
AGAGACCAAATGTGGATTCTCTACTTTTCTTCCTGTGTCTTCTGTCTGGT
TGGTTTCTGGTTATTGGATGGTAGTCCATTTCCATGAGGTGTGTCTGATT
TGTCTCTATGTCATTTAAGAATTGTGCTTACCTGTGTATTGTATCTGCCT
ATTACTAACAAGAAGATCTATTTTATATT

NTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTTCCTAATTATCCCACTCCCCCTTA
ACCCTACCTTCCTGCAGGGCTATGAGTGTTTGGGAAAGAGAGGAGTGGGA
GAGAAACTGCATCCCACCAGTTCCAGTGTTCTGGGCAGGCAGACACAGGA
GGACTGCCAGATGCTTTCCAGTGGCTCTGGCTGTGTAGCACTGACCCACC
CGCGGTGTGGACCAGGGCACCCCAGTACAGGTCCCAGTTCTGGTTTTTTT
CTGAAAAAAGGACAGGGGAAAAAAAATAGGGCCCCAAAGGGCTTTGGGCC
CAAAATAGGGGAAAAAAAGCCGGGAAAAGGGGGGGTTTGTTGGTTCCCCC
CCGGGGAAAGCCCTTTACCGGGCCCTTCCCCCCGGGTAAAAAAAGCCCTC
TTTTGGGAAAATACCATTTTTTTCAAAAGGGGGGGGGGGCCCTCCCGGGG
TTTTTTTTTGGAAAAAAAAGCTTTTTTTGGCCCTTTTCCCCCCCCCCTGG
AAAAAAAAACAATCTAGGGGGGGGTGGAGGAACCCCCCCAATAACCCGGA
AGCGGGTGTTTTTTTTTGGAAGAATTTTGTGGGACCCCCCCCCCAAAATA
TGTGCGGGGGGGGG

Query= MSMg01no480_f05.b1 MSMg01no480_f05.b1 CHROMAT_FILE:
MSMg01no480_f05.b1 PHD_FILE: MSMg01no480_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:35 2005
         (590 letters)



>mm_chr1_29956147_29957136
          Length = 990

 Score = 1093 bits (565), Expect = 0.0
 Identities = 581/589 (98%), Gaps = 6/589 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactga---ttacgtatctctacattgccccccccccaattttttggtcataat 61
           ||||||||||||   |   ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 652 gaattccactgagagt---gtatctctacattcccccccccccaattttttggtcataat 596

                                                                       
Query: 62  tgtgatgtgaggctgattaaagatcatgacaggtataggatcttggaacccatggacttc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgtgatgtgaggctgattaaagatcatgacaggtataggatcttggaacccatggacttc 536

                                                                       
Query: 122 agtacacaggtacctcactaatatgtctcactaaaccccaactacttctctatatttctc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtacacaggtacctcactaatatgtctcactaaaccccaactacttctctatatttctc 476

                                                                       
Query: 182 ctcatgacaaagatgtctcctccctgaattcttctcagataaaaagatcacccacactca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctcatgacaaagatgtctcctccctgaattcttctcagataaaaagatcacccacactca 416

                                                                       
Query: 242 cccaactttgtgtcctcttctctaggttaacacattccagttcaaggagagttttggggt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cccaactttgtgtcctcttctctaggttaacacattccagttcaaggagagttttggggt 356

                                                                       
Query: 302 agatgaggagaggaagacataatatttggctgttgttttagcctaatcaaatgtccactt 361
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 355 agatgaggagaggaagacataacatttggctgttgttttagcctaatcaaatgtccactt 296

                                                                       
Query: 362 tcatctattctcatagaacagctatgtttttactgctatgaattagaacttctgtagatt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcatctattctcatagaacagctatgtttttactgctatgaattagaacttctgtagatt 236

                                                                       
Query: 422 agagaactccaatgaagacaccaaaatgaagtaatgccaccttaaggaatggaaagggtt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 agagaactccaatgaagacaccaaaatgaagtaatgccaccttaaggaatggaaagggtt 176

                                                                       
Query: 482 cttcttgaagaagacaaagaaagagaccaaatgtggattctctacttttcttcctgtgtc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cttcttgaagaagacaaagaaagagaccaaatgtggattctctacttttcttcctgtgtc 116

                                                            
Query: 542 ttctgtctggttggtttctggttattggatggtagtccatttccatgag 590
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ttctgtctggttggtttctggttattggatggtagtccatttccatgag 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)