BAC Information

Click to search

BAC

Clone NameMSMg01-480I13
Chromosome1 (Build37)
Map Location 48,764,321 - 48,764,576
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936
Downstream geneLOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480I13.T7 (MSMg01no480_i13.b1)MSMg01-480I13.TJ (MSMg01no480_i13.g1)
ACCAG561152AG561153
length729719
length of high quality
(start - end)
255 (325 - 579)186 (346 - 531)
definitionCHROMAT_FILE: MSMg01no480_i13.b1 PHD_FILE: MSMg01no480_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:52 2005CHROMAT_FILE: MSMg01no480_i13.g1 PHD_FILE: MSMg01no480_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGAGGGGCGG
AATTCATCCCATACCACACACTGGGGACAGAAAAGCTGCACATTGACTTG
CAAGGTGTAGAACGTATAAGACTAAGAATCACCATATATTTTTAAACATT
ATTTTATTTAGGAACTAACATCTTACTGTAATCTCCTTCTCTTTGGATAG
AAATCACTCTAATCTCCTCTTCGGATAAAAGCCTTAGAGGATATTGAAAT
TATATTTTTGTTTAATAGTGTCAATAATTTAGCATTAAATTTTATAATTT
TCATATTTTTATTATCTTGAATTCAATTAAAGATCCCTGCTACTCAATTT
TACCTCCTAACGATATCAAATATCAAAAGTCTTGGAGGAAAAATTATTTT
AGCTATTATTAAAAAATGAAGCCTCTTGAGGTTTAACATGTATAAATAAT
CTGTACTGCTCACGCCTTTGGGTTTCCTAAACCGAAACAAGCAAATTCCA
AGCCCATAGGCTGGATTAAGCATTTATACTTGCTCATATTCATACACATA
GAAATAAATCATTCTGTAGCAATAAGGACTTAGTGAGTAACCTGTTTTAA
TTAACTAGTGAGGGTTGCAATAAAGCAGTGATTTTAGCGACTCATTTAGT
ATACTAAACTGCATTTATTGAGTAATTTTCTATAATGATGGTAAAAAGAT
TAAAGAGGTTGGGTGTATACTTTTTCCCG
CGCATGATGTGGGAGGCCGGAGGCGCGCGGTTTCAAATCCGCGNGAACGA
NAGAAGGTGACAAAAAGGGCGATCNNNCCAGACNNNNANCAGGAAGGGGG
CNGGGATCTTGTCACACGCNTTTTCTGCATCTAATGAGATGATCATGTGC
TTTTTGTCTTTGAGTTTGTTTATATAATGGATGACATTGATGGATTTTCG
TATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCTATGA
TGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATT
GAGGATTTTTGTTTTTTTATTCANAAGAGAAAGTGGNCTGAAGNTCTCTA
TCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCA
TAAAATGAGTTAGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTT
GTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCGTCTGGTCCTGGGCTTTTTTTTGGCTGGGAGACTATTAATAAC
CGCTTCTATTTCTTTAGGGCATATGGGACTGTTTAGATGGTCTACTTGAA
CCTGATTCAACTTTGGTACCTTGGTAACCGTCCCGAAATTTGTCCATTTT
CGTCCAGGACTTTCCCAGTTTTGTTGAGTATAGCCTTTTTTGTAGAAAGG
ATCGGGTGGGGGGTTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_i13.b1 MSMg01no480_i13.b1 CHROMAT_FILE:
MSMg01no480_i13.b1 PHD_FILE: MSMg01no480_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:52 2005
         (255 letters)



>mm_chr1_48764121_48764776
          Length = 656

 Score =  441 bits (228), Expect = e-128
 Identities = 249/256 (97%), Gaps = 1/256 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattaaagatccctgctactcaattttacctcctaacgatatcaaatatcaaaagtcttg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aattaaagatccctgctactcaattttacctcctaacaatatcaaatatcaaaagtcttg 260

                                                                       
Query: 61  gaggaaaaattattttagctattattaaaaaa-tgaagcctcttgaggtttaacatgtat 119
            |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aaggaaaaattattttagccattattaaaaaaatgaagcctcttgaggtttaacatgtat 320

                                                                       
Query: 120 aaataatctgtactgctcacgcctttgggtttcctaaaccgaaacaagcaaattccaagc 179
           ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaataatctgttctgctcacgcttttgagtttcctaaaccgaaacaagcaaattccaagc 380

                                                                       
Query: 180 ccataggctggattaagcatttatacttgctcatattcatacacatagaaataaatcatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccataggctggattaagcatttatacttgctcatattcatacacatagaaataaatcatt 440

                           
Query: 240 ctgtagcaataaggac 255
           ||||||||||||||||
Sbjct: 441 ctgtagcaataaggac 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 656
Length adjustment: 9
Effective length of query: 246
Effective length of database: 647
Effective search space:   159162
Effective search space used:   159162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)