Query= MSMg01no480_o19.b1 MSMg01no480_o19.b1 CHROMAT_FILE:
MSMg01no480_o19.b1 PHD_FILE: MSMg01no480_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:23 2005
(556 letters)
>mm_chr1_42569553_42570508
Length = 956
Score = 1075 bits (556), Expect = 0.0
Identities = 556/556 (100%)
Strand = Plus / Plus
Query: 1 tagagacatagataatccctccaaaattcaaagttttgtatgttaatgtgccaaagcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagacatagataatccctccaaaattcaaagttttgtatgttaatgtgccaaagcatc 260
Query: 61 agaactggaagcctcagattttgtatcatgtagtcaactagattcagaagtaaaaatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaactggaagcctcagattttgtatcatgtagtcaactagattcagaagtaaaaatttg 320
Query: 121 tgcttagtcacaaggtgcaagtaagcaagcaagccagcctatatgtgcagcagagctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttagtcacaaggtgcaagtaagcaagcaagccagcctatatgtgcagcagagctcct 380
Query: 181 taggcactagacacacctctgccatggtgcagtgactcacacactgaatgcatgtttaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggcactagacacacctctgccatggtgcagtgactcacacactgaatgcatgtttaga 440
Query: 241 aggtttgcaagacacaggtcataaccccaaagaagatagaggcatatataggagaccagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtttgcaagacacaggtcataaccccaaagaagatagaggcatatataggagaccagc 500
Query: 301 ctagacaacagaggagacacaaagtttgtagaaactcagtataattaaattcagtataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagacaacagaggagacacaaagtttgtagaaactcagtataattaaattcagtataga 560
Query: 361 gatgtcttagatctcaaacagcccacaagacatataaagacttggaggccagcctgtgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgtcttagatctcaaacagcccacaagacatataaagacttggaggccagcctgtgac 620
Query: 421 atctttgagagatgttgggacatttaagatatgggacctaggagagaaaaattagatgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctttgagagatgttgggacatttaagatatgggacctaggagagaaaaattagatgac 680
Query: 481 tgagatgtgcctttagaagggaatggtgggggctggagagatggctcagtggttaagagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagatgtgcctttagaagggaatggtgggggctggagagatggctcagtggttaagagc 740
Query: 541 actgactgctctttca 556
||||||||||||||||
Sbjct: 741 actgactgctctttca 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_o19.g1 MSMg01no480_o19.g1 CHROMAT_FILE:
MSMg01no480_o19.g1 PHD_FILE: MSMg01no480_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:23 2005
(520 letters)
>mm_chr1_42613463_42614383
Length = 921
Score = 953 bits (493), Expect = 0.0
Identities = 514/521 (98%), Gaps = 2/521 (0%)
Strand = Plus / Minus
Query: 1 tgggatagagccagaggcaggaaagccgccaaggaagaattaaagacctggatgcttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tgggatagagccagaggcaggaaagccgccaaggaagaattaaagacctggatgcttggt 839
Query: 61 acttgaacacagataaccagccacatggcaaaatgtaggcgaaaataattgggttatttt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 acttgagcacagataaccagccacatggcaaaatgtaggcgaaaataattgggttatttt 779
Query: 121 agttatgatttagtcagagtagagcttagctatatagacaaaatatttgtaaatatattt 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 agttatgatctagtcagagtagagcttagctatatagacaaaatatttgtaaatatattt 719
Query: 181 tgaggttgagtcttatttctggaagcatgggcctgggaggaagaaccaggtgtaacgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgaggttgagtcttatttctggaagcatgggcctgggaggaagaaccaggtgtaacgtca 659
Query: 241 acagaacct-cccccaatgttttcaggttctcttattttcttcatatcacaccaataaca 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 acagaacctccccccaatgttttcaggttctcttattttcttcatatcacaccaataaca 599
Query: 300 ccgttctttatatttctcaccagatgttgttcggttaacctgcccaactgcttgagatag 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 598 ccgttctttatatttctcaccagatgttgttcagttaacctgcccaactgcttgagatag 539
Query: 360 aacagtgaacctctggaaaatcatttatttatttagcagtgatgggttttgtttattcta 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aacagtgaacctctggcaaatcatttatttatttagcagtgatgggttttgtttattcta 479
Query: 420 ggcaagtgttctattcttgagctatatactcagccttttatttaaaaatttgtttaaata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggcaagtgttctattcttgagctatatactcagccttttatttaaaaatttgtttaaata 419
Query: 480 ttttttttgaaacggagcgatacacttacgttagaaatttt 520
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 418 -tttttttgaaatggagcgatacacttacgttagaaatttt 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
