BAC Information

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BAC

Clone NameMSMg01-481F15
Chromosome1 (Build37)
Map Location 120,555,026 - 120,732,489
singlet/doubletdoublet
Overlap geneTcfcp2l1, LOC100041753, Gli2
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481F15.T7 (MSMg01no481_f15.b1)MSMg01-481F15.TJ (MSMg01no481_f15.g1)
ACCAG561778AG561779
length759774
length of high quality
(start - end)
513 (64 - 576)347 (323 - 669)
definitionCHROMAT_FILE: MSMg01no481_f15.b1 PHD_FILE: MSMg01no481_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:58 2005CHROMAT_FILE: MSMg01no481_f15.g1 PHD_FILE: MSMg01no481_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,731,976 - 120,732,489)(120,555,026 - 120,555,372)
sequence
CTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANAAATGGGNGGAAT
TNNTCACGCTTCACCACACCCCGGAATTCCTTGACACTGCCCTCCATCCC
TGCGGGCATCAGCAACATGGCCGTGGGTGACATGAGTTCCATGCTCACCA
GCCTGGCTGAAGAGAGCAAGTTTTTAAACATGATGACCTAAAGGCCCTGG
CTCCTGGCACAGGAGACCTGAGCAACACTAGCCCCTTGGAATATGAGGGT
CTAGTCTGTTTTCATTGTCCCAAAGTGTTAACTAGGCCTGAGAGGGGTTG
GGCAATGGCCAACTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTC
TTGCAGATGTTTTAAGAAAAGATTAAGGGGCATCCTCTCTGCTGTTTGGC
CTATATGGGGGAGAGGGGTCACCCAAAGTCTTATTCAAAAAGAAACTCGT
TCACATGACGCTTGCCAGCCTCTGGTGTTTGTGAGATTCCCAGGTTCTGG
CTCCTTTGCCTCTATCATTCAGCTAATGAGAGAGAACTTTGGCCAAGGGC
TTTCCAAGTACACGCCCAAAGAGGGGAGGGGAGCCACTCTGGGTTTGAAT
CTGAAGACATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGCCATTC
TGCCACCTGGGAAGAAAGGGATTACTGTTTCCCCTGAATTCTTCCATGAA
GCACGTCAAGGTTGCCCACCACGGAGGAGAAAAGGGCACCCCCCTGGGAT
ATTGAAGCN
AGGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATACCTGCTATTAGTGTTCCTGTGTGGCTTAC
TACAAGCTTATCTTTACCTAGGGCTGGATCACCCCAAGAGAGGTTTCCCT
AAAAGCCCCTGATCTGGGAACCAAAAGGCATCCCTTGAGGAAGACGCACA
CTGGGATGCAAGTCCTGTGCGGCCGGCCGGCCACTAGACCTGAACTAAGT
GTTCCTATCTACACATCAAGGGCTCTGGGGCTTCTACCTGTGCTTGCCAA
GCAGGATAGGATAGGATTTTGAGCCATGAGAGGCACAATGAAGGTGACAC
AGGAGTGAGGGAGGGAGGGACTGTACCCTCAGGTCTCTCCTCCTAACAAA
CCCTGAGCCTCTAGTTTGTGAAGAAGAGAGATGATGGTGGCTCTGAGGCT
GGCACTCGCTGGCACTATCTGTGACTAGAAATAGATTCTGCAGCCTGTTG
CATCATCATTTAGCTACAGCAGAGACGGATGCCTTTGGGGCTGCGATGTT
GAGGGCTGGGTGTGCTGGGCCTGAGCAGAGTTGAACAAGGCACAGTGTGG
GTCAGAATCCACTCTCCTACCTTTCTGTGGTCTCCATCAGTCGCCCCAGC
ACTGATATATCCTGTCTTGGNTCTCCATGGCTCCTTCCAGAAGCAAGTGG
CCATTGGTGGCAATCTTCCTAAATACTTCCTGCTGAGCTCAAAGATCACA
GGGGGTGGAAAGAAAACATGTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_f15.b1 MSMg01no481_f15.b1 CHROMAT_FILE:
MSMg01no481_f15.b1 PHD_FILE: MSMg01no481_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:58 2005
         (513 letters)



>mm_chr1_120731776_120732689
          Length = 914

 Score =  932 bits (482), Expect = 0.0
 Identities = 506/514 (98%), Gaps = 1/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacaccccggaattccttgacactgccctccatccctgcgggcatcagcaacatggccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccacaccccggaattccttgacactgccctccatccctgcgggcatcagcaacatggccg 655

                                                                       
Query: 61  tgggtgacatgagttccatgctcaccagcctggctgaagagagcaagtttttaaacatga 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgggcgacatgagttccatgctcaccagcctggctgaagagagcaagtttttaaacatga 595

                                                                       
Query: 121 tgacctaaaggccctggctcctggcacaggagacctgagcaacactagccccttggaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgacctaaaggccctggctcctggcacaggagacctgagcaacactagccccttggaata 535

                                                                       
Query: 181 tgagggtctagtctgttttcattgtcccaaagtgttaactaggcctgagaggggttgggc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgagggtctagtctgttctcattgtcccaaagtgttaactaggcctgagaggggttgggc 475

                                                                       
Query: 241 aatggccaactccaaatgacagctctgggccatgcccaggggtcttcttgcagatgtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aatggccaactccaaatgacagctctgggccatgcccaggggtcttcttgcagatgtttt 415

                                                                       
Query: 301 aagaaaagattaaggggcatcctctctgctgtttggcctatatgggggag-aggggtcac 359
           ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||
Sbjct: 414 aagaaaagattaaggggcatcctctctgctgtttggcctatttggggggggaggggacac 355

                                                                       
Query: 360 ccaaagtcttattcaaaaagaaactcgttcacatgacgcttgccagcctctggtgtttgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ccaaagtcttattcaaaaagaaactcgttcacatgacgcttgccagcctctggtgtttgt 295

                                                                       
Query: 420 gagattcccaggttctggctcctttgcctctatcattcagctaatgagagagaactttgg 479
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagattcccgggttctggctcctttgcctctatcattcagctaatgagagagaactttgg 235

                                             
Query: 480 ccaagggctttccaagtacacgcccaaagagggg 513
           ||| ||||||||||||||||||||||||||||||
Sbjct: 234 ccaggggctttccaagtacacgcccaaagagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space:   454712
Effective search space used:   454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no481_f15.g1 MSMg01no481_f15.g1 CHROMAT_FILE:
MSMg01no481_f15.g1 PHD_FILE: MSMg01no481_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:58 2005
         (347 letters)



>mm_chr1_120554826_120555572
          Length = 747

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccatgagaggcacaatgaaggtgacacaggagtgagggagggagggactgtaccctcag 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gccatgagaggcacaatgaaggtgacacaggagtgagtgagggagggactgtaccctcag 260

                                                                       
Query: 61  gtctctcctcctaacaaaccctgagcctctagtttgtgaagaagagagatgatggtggct 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctctcctcccaacaaaccctgagcctctagtttgtgaagaagagagatgatggtggct 320

                                                                       
Query: 121 ctgaggctggcactcgctggcactatctgtgactagaaatagattctgcagcctgttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaggctggcactcgctggcactatctgtgactagaaatagattctgcagcctgttgca 380

                                                                       
Query: 181 tcatcatttagctacagcagagacggatgcctttggggctgcgatgttgagggctgggtg 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcatttagccacagcagagacggatgcctttggggctgcgatgttgagggctgggtg 440

                                                                       
Query: 241 tgctgggcctgagcagagttgaacaaggcacagtgtgggtcagaatccactctcctacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgggcctgagcagagttgaacaaggcacagtgtgggtcagaatccactctcctacct 500

                                                          
Query: 301 ttctgtggtctccatcagtcgccccagcactgatatatcctgtcttg 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgtggtctccatcagtcgccccagcactgatatatcctgtcttg 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)