Query= MSMg01no481_g01.b1 MSMg01no481_g01.b1 CHROMAT_FILE:
MSMg01no481_g01.b1 PHD_FILE: MSMg01no481_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:00 2005
(618 letters)
>mm_chr1_139061550_139062566
Length = 1017
Score = 1108 bits (573), Expect = 0.0
Identities = 613/643 (95%), Gaps = 29/643 (4%)
Strand = Plus / Minus
Query: 1 ccatgtgtactgccatgttccctgccatgatgataaattggactaaacctctgaaccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ccatgtgtactgccatgttccctgccatgatgataaattggactaaacctctgaaccata 831
Query: 61 aaccagtcccaattctttcctttatcagagttgccatggtcatgatgtctcttcacaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 aaccagtcccaattctttcctttatcagagttgccatggtcatgatgtctcttcacaaca 771
Query: 121 atagaacactatgacaggaaaccaaggatgaggagaatcatggactcaaggacaccttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 atagaacactatgacaggaaaccaaggatgaggagaatcatggactcaaggacaccttag 711
Query: 181 actacacaatgagttccagactagttgggaaaagagtaagaccctgtctcataaaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 710 actacacaatgagttccagactagttgggaaaagagtaagaccctgtctcaaaaaaaaaa 651
Query: 241 aaaaaaaaaaaatatcacacacagaaatctcagtattcagacagggcaattgatctttgt 300
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaaaaaaaaaaa-a--ac-cacagaaatctcagtattcagacagggcaattgatctttgt 595
Query: 301 gagttttagactagcttggtctatataatgagctccaagctaggattaactagtaggatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gagttttagactagcttggtctatataatgagctccaagctaggattaactagtaggatc 535
Query: 361 ctatctcaacaacaacaaagagaggacaaaagggtgggagaggaaggaaggaaatattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctatctcaacaacaacaaagagaggacaaaagggtgggagaggaaggaaggaaatattta 475
Query: 421 gtcaaagagatatgtcaactggttggctgtactttt------------------------ 456
||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtcaaagagatatgtcaactggttggctgtacttttcttttgttttgttttgttttgttt 415
Query: 457 -gttttgttttgttttgttttgttttgttttgttttgttttgtttttttgagacagggtt 515
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgttttgttttgttttgttttgttttgttttgttttgttttgtttttttgagacagggtt 355
Query: 516 tctctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactc 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tctctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactc 295
Query: 576 agaaatccgcctgcctctgcctcccgagtgctgggattaaagg 618
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agaaatccgcctgcctctgcctcccgagtgctgggattaaagg 252
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_g01.g1 MSMg01no481_g01.g1 CHROMAT_FILE:
MSMg01no481_g01.g1 PHD_FILE: MSMg01no481_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:00 2005
(519 letters)
>mm_chr1_138893329_138894247
Length = 919
Score = 951 bits (492), Expect = 0.0
Identities = 507/512 (99%)
Strand = Plus / Plus
Query: 1 tctggataaccaccatcagcttgcttttgacttttattgtgggggccactgggaaacgct 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tctggataaccgccatcagcttgcttttgacttttattgtgggggccactgggaaatgct 260
Query: 61 cttcaggctttaggtagtgtagactacctctttaacgattcagatgtttgctcttttgat 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cttcaggctttaggtagtgtagactacctctttaacaattcagatgtttgctcttttgat 320
Query: 121 gataaaactttattagacacctactgcaggccaggcactatatggatcctggttgtaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataaaactttattagacacctactgcaggccaggcactatatggatcctggttgtaaaa 380
Query: 181 tggagggtcaggcagtctggttgcttaccttcacagaccctgtgttcaagtgggaaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagggtcaggcagtctggttgcttaccttcacagaccctgtgttcaagtgggaaagag 440
Query: 241 taaggctgagtaacaaaggtggtttcagagtcataggtgcaggcactttgtcataggtgt 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 taaggctgagtaacaaaggtggtttcagagtcacaggtgcaggcactttgtcataggtgt 500
Query: 301 cactgcagaaggcagcggacagctggttagaagtagtcccggaaggtgagagcttccctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgcagaaggcagcggacagctggttagaagtagtcccggaaggtgagagcttccctg 560
Query: 361 agaagctgctgcgatttaactatctggagaaagtaggttttgggcagagagcagcaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagctgctgcgatttaactatctggagaaagtaggttttgggcagagagcagcaaatg 620
Query: 421 ctacgaatctgaggtcaagatcaaggccctggtaatctctgctttacagaaaatttctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacgaatctgaggtcaagatcaaggccctggtaatctctgctttacagaaaatttctct 680
Query: 481 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 512
|||||||||||||||||||||||||||||||
Sbjct: 681 ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
