Query= MSMg01no481_i20.b1 MSMg01no481_i20.b1 CHROMAT_FILE:
MSMg01no481_i20.b1 PHD_FILE: MSMg01no481_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:13 2005
(687 letters)
>mm_chr1_76065469_76066556
Length = 1088
Score = 1259 bits (651), Expect = 0.0
Identities = 679/689 (98%), Gaps = 5/689 (0%)
Strand = Plus / Minus
Query: 2 ggaattcacctttcca-tcccgttcttacttcgctggaagttgcctttggctgacatgca 60
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ggaattcacctttccact-cagttcttacttcgctggaagttgcctttggctgacatgca 830
Query: 61 aacatatgacaagaactccaagcaatttcttcatgaaacactgtccaacaaacatcaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aacatatgacaagaactccaagcaatttcttcatgaaacactgtccaacaaacatcaaca 770
Query: 121 aatagctaatgtgaaccgcctgtgagtactcaggtcacgtcagtgaagaaagcagatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aatagctaatgtgaaccgcctgtgagtactcaggtcacgtcagtgaagaaagcagatcag 710
Query: 181 atgacggcctgaggagggcttactttaccaatgacagaggagtaggtgtatgtaaacagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 atgacggcctgaggagggcttactttaccaatgacagaggagtaggtgtatgtaaacagt 650
Query: 241 gaacaaacaggaagacgagacggagaaataaattacagtgtcctggaagtcc--tggatg 298
||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 649 gaacaaacaggaagacgagacggagaaataaattacagtgtcctggaag-ccaatagatg 591
Query: 299 gtgtgggggtggagcaagcaaaggacatctagtcacatatgtgtaacagggcaagggcag 358
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 590 gtgtgggggtggagcaagcaaaggacatccagtcacatatgtgtaacagggcaagggcag 531
Query: 359 ttatagcttggcactggcatcgtgaatgagaagtgaaatttagacagagatgctgagtgg 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 530 ttatagcttggcactggcatcgtggatgagaagtgaaatttagacagagatgctgagtgg 471
Query: 419 gttgtttctgagctccctggggaaggaatttccagacatggaccatctaaccaaatgtta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gttgtttctgagctccctggggaaggaatttccagacatggaccatctaaccaaatgtta 411
Query: 479 tagtattcaaacatccacaagaggcaatcatgttgacaggaatagaacaagccaggggaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tagtattcaaacatccacaagaggcaatcatgttgacaggaatagaacaagccaggggaa 351
Query: 539 gactaggaaatggggtcagatgtcttgccgggaagaactgaggtgtctggcaagcgtgga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gactaggaaatggggtcagatgtcttgccgggaagaactgaggtgtctggcaagcgtgga 291
Query: 599 aggcactactccatcttagctggagtgcaagtccctggggatacaaatcaacccttgagt 658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 290 aggcactactccatcttagctggagtgcaagtccctagggatacaaatcaacccttgagt 231
Query: 659 ccccgacataagaaatgagcaagccacca 687
|||||||||||||||||||||||||||||
Sbjct: 230 ccccgacataagaaatgagcaagccacca 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_i20.g1 MSMg01no481_i20.g1 CHROMAT_FILE:
MSMg01no481_i20.g1 PHD_FILE: MSMg01no481_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:13 2005
(672 letters)
>mm_chr1_75873521_75874591
Length = 1071
Score = 1253 bits (648), Expect = 0.0
Identities = 665/672 (98%), Gaps = 4/672 (0%)
Strand = Plus / Plus
Query: 1 acttgcactgttgactccagggtgtctgcaatcacaagcggacaccagcaagtgactgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgcactgttgactccagggtgtctgcaatcacaagcggacaccagcaagtgactgta 260
Query: 61 cagcaatttcagtgtcatccttgagtcagaatttccctgctgtgtctgtctggcccatca 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccatttcagtgtcatccttgagtcagaatttccctgctgtgtctgtctggcccatca 320
Query: 121 ggctatgtccctccatgtaagagagcaagagtcacccactagagagaggtgaggtagaga 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ggctatgtccctccatgtaagagagca-gagtcacccactagagagaggtgaggtagaga 379
Query: 181 cactcttgttttgagcatattctctgagttttatggctggctttcagcgtagttatgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cactcttgttttgagcatattctctgagttttatggctggctttcagcgtagttatgtaa 439
Query: 241 tccccatgcatatgccatctgccatgtttggcacttgcaataaaatatttaagatatttt 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccccatgcaaatgccatctgccatgtttggcacttgcaataaaatatttaagatatttt 499
Query: 301 attcatcctgcttgagaaacagattttcagaaatcagatctctcctttcccgagagcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 attcatcctgcttgagaaacagattttcagaaatcagatctctcctttcccgagagcaca 559
Query: 361 gctctatagagactgcatatgaattcttccacgcacgactgcagttcctatttttagcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctctatagagactgcatatgaattcttccacgcacgactgcagttcctatttttagcca 619
Query: 421 gggtttgggctataaacttgaaagttttcgagtttttgtttgccattttggagctttgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggtttgggctataaacttgaaagttttcgagtttttgtttgccattttggagctttgat 679
Query: 481 tttaaaaccaactgaaaagtttgcctgcttgcttgctttctcttcagtgtgaatttttac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttaaaaccaactgaaaagtttgcctgcttgcttgctttctcttcagtgtgaatttttac 739
Query: 541 tgttctttttaaagacagtttgcactttcagaatgatgtaatgaagactactttgcaggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 740 tgttctttttaaagacagtttgcactttcagaatgatgtaatgaagactactttgcaagc 799
Query: 601 ttggatgattaaaaaaagaaaagcagaagggcaaagagatgaaagaagataggtacctgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttggatgattaaaaaaagaaaagcagaagggcaaagagatgaaagaagataggtacctgt 859
Query: 661 cattatctgggt 672
||| ||||||
Sbjct: 860 cat---ctgggt 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|