BAC Information

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BAC

Clone NameMSMg01-481I20
Chromosome1 (Build37)
Map Location 75,873,721 - 76,066,356
singlet/doubletdoublet
Overlap genenone
Upstream geneCdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481I20.T7 (MSMg01no481_i20.b1)MSMg01-481I20.TJ (MSMg01no481_i20.g1)
ACCAG561931AG561932
length759756
length of high quality
(start - end)
687 (44 - 730)672 (71 - 742)
definitionCHROMAT_FILE: MSMg01no481_i20.b1 PHD_FILE: MSMg01no481_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:13 2005CHROMAT_FILE: MSMg01no481_i20.g1 PHD_FILE: MSMg01no481_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,065,670 - 76,066,356)(75,873,721 - 75,874,388)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCTTTCCATCCCGTTCTTACTTCGCTGGAAGTTGCCTTTGGCTGACAT
GCAAACATATGACAAGAACTCCAAGCAATTTCTTCATGAAACACTGTCCA
ACAAACATCAACAAATAGCTAATGTGAACCGCCTGTGAGTACTCAGGTCA
CGTCAGTGAAGAAAGCAGATCAGATGACGGCCTGAGGAGGGCTTACTTTA
CCAATGACAGAGGAGTAGGTGTATGTAAACAGTGAACAAACAGGAAGACG
AGACGGAGAAATAAATTACAGTGTCCTGGAAGTCCTGGATGGTGTGGGGG
TGGAGCAAGCAAAGGACATCTAGTCACATATGTGTAACAGGGCAAGGGCA
GTTATAGCTTGGCACTGGCATCGTGAATGAGAAGTGAAATTTAGACAGAG
ATGCTGAGTGGGTTGTTTCTGAGCTCCCTGGGGAAGGAATTTCCAGACAT
GGACCATCTAACCAAATGTTATAGTATTCAAACATCCACAAGAGGCAATC
ATGTTGACAGGAATAGAACAAGCCAGGGGAAGACTAGGAAATGGGGTCAG
ATGTCTTGCCGGGAAGAACTGAGGTGTCTGGCAAGCGTGGAAGGCACTAC
TCCATCTTAGCTGGAGTGCAAGTCCCTGGGGATACAAATCAACCCTTGAG
TCCCCGACATAAGAAATGAGCAAGCCACCAGAGAGTATGAGGTACCAGAG
GAAAGGGGN
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTGCACTGTTGACTCCAGGGTGTCTGCA
ATCACAAGCGGACACCAGCAAGTGACTGTACAGCAATTTCAGTGTCATCC
TTGAGTCAGAATTTCCCTGCTGTGTCTGTCTGGCCCATCAGGCTATGTCC
CTCCATGTAAGAGAGCAAGAGTCACCCACTAGAGAGAGGTGAGGTAGAGA
CACTCTTGTTTTGAGCATATTCTCTGAGTTTTATGGCTGGCTTTCAGCGT
AGTTATGTAATCCCCATGCATATGCCATCTGCCATGTTTGGCACTTGCAA
TAAAATATTTAAGATATTTTATTCATCCTGCTTGAGAAACAGATTTTCAG
AAATCAGATCTCTCCTTTCCCGAGAGCACAGCTCTATAGAGACTGCATAT
GAATTCTTCCACGCACGACTGCAGTTCCTATTTTTAGCCAGGGTTTGGGC
TATAAACTTGAAAGTTTTCGAGTTTTTGTTTGCCATTTTGGAGCTTTGAT
TTTAAAACCAACTGAAAAGTTTGCCTGCTTGCTTGCTTTCTCTTCAGTGT
GAATTTTTACTGTTCTTTTTAAAGACAGTTTGCACTTTCAGAATGATGTA
ATGAAGACTACTTTGCAGGCTTGGATGATTAAAAAAAGAAAAGCAGAAGG
GCAAAGAGATGAAAGAAGATAGGTACCTGTCATTATCTGGGTAAAGAGGG
CCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_i20.b1 MSMg01no481_i20.b1 CHROMAT_FILE:
MSMg01no481_i20.b1 PHD_FILE: MSMg01no481_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:13 2005
         (687 letters)



>mm_chr1_76065469_76066556
          Length = 1088

 Score = 1259 bits (651), Expect = 0.0
 Identities = 679/689 (98%), Gaps = 5/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcacctttcca-tcccgttcttacttcgctggaagttgcctttggctgacatgca 60
           |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ggaattcacctttccact-cagttcttacttcgctggaagttgcctttggctgacatgca 830

                                                                       
Query: 61  aacatatgacaagaactccaagcaatttcttcatgaaacactgtccaacaaacatcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aacatatgacaagaactccaagcaatttcttcatgaaacactgtccaacaaacatcaaca 770

                                                                       
Query: 121 aatagctaatgtgaaccgcctgtgagtactcaggtcacgtcagtgaagaaagcagatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aatagctaatgtgaaccgcctgtgagtactcaggtcacgtcagtgaagaaagcagatcag 710

                                                                       
Query: 181 atgacggcctgaggagggcttactttaccaatgacagaggagtaggtgtatgtaaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 atgacggcctgaggagggcttactttaccaatgacagaggagtaggtgtatgtaaacagt 650

                                                                       
Query: 241 gaacaaacaggaagacgagacggagaaataaattacagtgtcctggaagtcc--tggatg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||  | ||||
Sbjct: 649 gaacaaacaggaagacgagacggagaaataaattacagtgtcctggaag-ccaatagatg 591

                                                                       
Query: 299 gtgtgggggtggagcaagcaaaggacatctagtcacatatgtgtaacagggcaagggcag 358
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 590 gtgtgggggtggagcaagcaaaggacatccagtcacatatgtgtaacagggcaagggcag 531

                                                                       
Query: 359 ttatagcttggcactggcatcgtgaatgagaagtgaaatttagacagagatgctgagtgg 418
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 530 ttatagcttggcactggcatcgtggatgagaagtgaaatttagacagagatgctgagtgg 471

                                                                       
Query: 419 gttgtttctgagctccctggggaaggaatttccagacatggaccatctaaccaaatgtta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gttgtttctgagctccctggggaaggaatttccagacatggaccatctaaccaaatgtta 411

                                                                       
Query: 479 tagtattcaaacatccacaagaggcaatcatgttgacaggaatagaacaagccaggggaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tagtattcaaacatccacaagaggcaatcatgttgacaggaatagaacaagccaggggaa 351

                                                                       
Query: 539 gactaggaaatggggtcagatgtcttgccgggaagaactgaggtgtctggcaagcgtgga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gactaggaaatggggtcagatgtcttgccgggaagaactgaggtgtctggcaagcgtgga 291

                                                                       
Query: 599 aggcactactccatcttagctggagtgcaagtccctggggatacaaatcaacccttgagt 658
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 290 aggcactactccatcttagctggagtgcaagtccctagggatacaaatcaacccttgagt 231

                                        
Query: 659 ccccgacataagaaatgagcaagccacca 687
           |||||||||||||||||||||||||||||
Sbjct: 230 ccccgacataagaaatgagcaagccacca 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space:   729806
Effective search space used:   729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no481_i20.g1 MSMg01no481_i20.g1 CHROMAT_FILE:
MSMg01no481_i20.g1 PHD_FILE: MSMg01no481_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:13 2005
         (672 letters)



>mm_chr1_75873521_75874591
          Length = 1071

 Score = 1253 bits (648), Expect = 0.0
 Identities = 665/672 (98%), Gaps = 4/672 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgcactgttgactccagggtgtctgcaatcacaagcggacaccagcaagtgactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgcactgttgactccagggtgtctgcaatcacaagcggacaccagcaagtgactgta 260

                                                                       
Query: 61  cagcaatttcagtgtcatccttgagtcagaatttccctgctgtgtctgtctggcccatca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccatttcagtgtcatccttgagtcagaatttccctgctgtgtctgtctggcccatca 320

                                                                       
Query: 121 ggctatgtccctccatgtaagagagcaagagtcacccactagagagaggtgaggtagaga 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ggctatgtccctccatgtaagagagca-gagtcacccactagagagaggtgaggtagaga 379

                                                                       
Query: 181 cactcttgttttgagcatattctctgagttttatggctggctttcagcgtagttatgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cactcttgttttgagcatattctctgagttttatggctggctttcagcgtagttatgtaa 439

                                                                       
Query: 241 tccccatgcatatgccatctgccatgtttggcacttgcaataaaatatttaagatatttt 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccccatgcaaatgccatctgccatgtttggcacttgcaataaaatatttaagatatttt 499

                                                                       
Query: 301 attcatcctgcttgagaaacagattttcagaaatcagatctctcctttcccgagagcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 attcatcctgcttgagaaacagattttcagaaatcagatctctcctttcccgagagcaca 559

                                                                       
Query: 361 gctctatagagactgcatatgaattcttccacgcacgactgcagttcctatttttagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctctatagagactgcatatgaattcttccacgcacgactgcagttcctatttttagcca 619

                                                                       
Query: 421 gggtttgggctataaacttgaaagttttcgagtttttgtttgccattttggagctttgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggtttgggctataaacttgaaagttttcgagtttttgtttgccattttggagctttgat 679

                                                                       
Query: 481 tttaaaaccaactgaaaagtttgcctgcttgcttgctttctcttcagtgtgaatttttac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttaaaaccaactgaaaagtttgcctgcttgcttgctttctcttcagtgtgaatttttac 739

                                                                       
Query: 541 tgttctttttaaagacagtttgcactttcagaatgatgtaatgaagactactttgcaggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 740 tgttctttttaaagacagtttgcactttcagaatgatgtaatgaagactactttgcaagc 799

                                                                       
Query: 601 ttggatgattaaaaaaagaaaagcagaagggcaaagagatgaaagaagataggtacctgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttggatgattaaaaaaagaaaagcagaagggcaaagagatgaaagaagataggtacctgt 859

                       
Query: 661 cattatctgggt 672
           |||   ||||||
Sbjct: 860 cat---ctgggt 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space:   702382
Effective search space used:   702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)