CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAA
TTCTGTGTGTACTTCTCAAAGTGATGCCTCTCAGGCCTATGAAAAGTCAA
AGCTTGATCAGAATGTCATCAAACTGGCCTGTCAAGTTTTTCAAATGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACACGTGT
AGGTTCACATTAAGAGGAGAAGGCAATTATAGTCAAAAGTTTTCTAATGC
AAGTGTTCTAAGACTATGGGAGAGAAAAATGTCTTATTATCCAAGGAAGG
ATTAAACGCCTTATTTATAGTCTGTATTTGTTTGTTGTTATCAGATGGAC
ATCCTACGTTAATATGTGGATTTCATCATAGCTTCTCTTATTGAAATTTG
TCTTCTGTAGATATGTTGTTTCTTTTTTTTTTTTCCTACCAGTGAGGGTT
TGTAATGTTTTGATGCTTAAACCCAATTGAATCTATTTTCCATTTTGCTC
TCCTTGATTTTTCTTGATCGATCCTATCCTATATTCAAACCAAAAGAACT
CTGTAACTATGAGAAACAGGTTTCTGCAAACTGAGGGTCATTACCTGGTT
GACACCAATTTATGCTTGATTTCTCCACTATAATATAACTGTTGGGGTAT
GTTGACCACTGACTTCTCTGTCTTCCCGAATTAAAACCCATTTTGATCTT
ACTGTTACATGACGAAATATTTACTAAATTCTTACCTTCTCAATAGACTT
TTTTATAACACN

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGAAATTGTTAGGCAAATGGATGGACC
TAAAAAATGTCATCTTGAGTGAGGTAACCAAGTCACAAAAGAACACACAT
GGTATGCACTCAGTGATAAGTGGACATTAACCCAGAAATTCAGAATACCC
AAGATACAATTCACAGACCACATGAAGCTCAAGAAGAAGGAAGACCAAAG
TGTGGGTGCTTCTGTCCTTCTTAGAAAGGGGAAAAATACTCATGGGAGCA
AATAAGGAGACAAAGTACAGAGCAGAAACTGAAGGAAAGGCCATCCATAG
ACTATCCCACCTGGAGATGCATCCCAGATACAGTCACCAAACTCTGACAC
TATTGTGGATGCTAAGAAATGCTTACTGAAAGGAGCCTGATATAGCTGTC
TCCTGAGAGTCCCCGCCAGAGCCTTACAGAGTTGGATGCTCACAGCCAAC
CATTGCACTGAGTATGGAGTCCTCAATGGAGGAGTTAGAGAAAGGACTAA
AGGAGCTGGAGGGGTTTGCAACCCCATAGGAATAACAACAATATCAACCA
ACCAGATGCCCCAGAGCTCCCAGGGACTAAGCCACCAACCAAGGAGTACA
CATTGCTCCAGCTGCATGTGTAGCAGAGGACAGCCTTGTCAGGTATCAAT
GGGAAGAGAGGTCCTTAGTCCTATGAAGACTGGGTAGATGCCCCAGCGTA
NGGAAATCGAGGGTGG

Query= MSMg01no481_i22.b1 MSMg01no481_i22.b1 CHROMAT_FILE:
MSMg01no481_i22.b1 PHD_FILE: MSMg01no481_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:14 2005
         (581 letters)



>mm_chr1_140097335_140098314
          Length = 980

 Score =  882 bits (456), Expect = 0.0
 Identities = 487/502 (97%), Gaps = 9/502 (1%)
 Strand = Plus / Minus

                                                                       
Query: 80  actggcctgtcaagtttttcaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 139
           |||||||||||||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 980 actggcctgtcaagtttttcaaa--------tgtgtgtgtgtgtgtgtgtgtgtgtgtgt 929

                                                                       
Query: 140 gtgtgtgtatacacgtgtaggttcacattaagaggagaaggcaattatagtcaaaagttt 199
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gtgtgtgtatacatgtgtaggttcacattaagaggagaaggcaattatagtcaaaagttt 869

                                                                       
Query: 200 tctaatgcaagtgttctaagactatgggagagaaaaatgtcttattatccaaggaaggat 259
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 868 tctaatgcaagtgttctaagactatgggagaggaaaatgtcttattatccaaggaaggat 809

                                                                       
Query: 260 taaacgccttatttatagtctgtatttgtttgttgttatcagatggacatcctacgttaa 319
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 808 taaacgtcttatttatagtctgtatttgtttgttgttatcagatggacatcctatgttaa 749

                                                                       
Query: 320 tatgtggatttcatcatagcttctcttattgaaatttgtcttctgtagatatgttgtttc 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tatgtggatttcatcatagcttctcttattgaaatttgtcttctgtagatatgttgtttc 689

                                                                       
Query: 380 ttttttttttttcctaccagtgagggtttgtaatgttttgatgcttaaacccaattgaat 439
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 -tttttttttttcctaccagtgagggtttgtaatgttttgatgcttaaacccaattgaat 630

                                                                       
Query: 440 ctattttccattttgctctccttgatttttcttgatcgatcctatcctatattcaaacca 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctattttccattttgctctccttgatttttcttgatcgatcctatcctatattcaaacca 570

                                                                       
Query: 500 aaagaactctgtaactatgagaaacaggtttctgcaaactgagggtcattacctggttga 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaagaactctgtaactatgagaaacaggtttctgcaaactgagggtcattacctggttga 510

                                 
Query: 560 caccaatttatgcttgatttct 581
           || | |||||||||||||||||
Sbjct: 509 cagcgatttatgcttgatttct 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space:   553870
Effective search space used:   553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)