BAC Information

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BAC

Clone NameMSMg01-481J15
Chromosome1 (Build37)
Map Location 173,095,316 - 173,275,955
singlet/doubletdoublet
Overlap genePcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2
Upstream geneUap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz
Downstream gene1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481J15.T7 (MSMg01no481_j15.b1)MSMg01-481J15.TJ (MSMg01no481_j15.g1)
ACCAG561969AG561970
length741768
length of high quality
(start - end)		675 (67 - 741)633 (70 - 702)
definitionCHROMAT_FILE: MSMg01no481_j15.b1 PHD_FILE: MSMg01no481_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:17 2005CHROMAT_FILE: MSMg01no481_j15.g1 PHD_FILE: MSMg01no481_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,095,316 - 173,095,990)(173,275,323 - 173,275,955)
sequence
CAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATGCGCGGAAT
TCAAGGCCATTCTCGTCTACAGAATGGGTTCCAGGGCTTTTACACAGAAA
AACTCTGTCTCAGAAAAAAAAAAAAATTAAATGAGTTAATATGTGTGAAA
GTGCCTGGAAAGGGGACTGAGCCACAGGGGTACTTTACAAGTCTCTCTTA
CCTCTCATGGCCTATCTGTAGCATGAGACTCAAGTATCACCCCAACCTAG
GGAATGAAGATCTCAGAGGGCCCTAACTATGAAACCTTCTAAGTCAACAG
AATTCAACCCAGCAAAGAATAATCACAGCTGACCTGGTCATTGGTCCATT
GCATCCTTAGATTCTGACACAGCCTCCCCCCTTGACAAATGAGGACACTG
AGTCATGGAGACATTTATTAACTTTGCCAAGGCACAATGGTCACTGAACT
AAGACTAGAACTCAGGACCTAGCACTAAGAGGACACTGAGGGACGGGATT
CATGCACCTATCTGTCACACTGGTTTCTAAGTGTGTGAGCTTTTGGCCAC
CTTCACCATTTGACTGCTGGCTTCTGGAAATACCAGCAATGACATCATGC
TCGGAGACTCAAACTATGTTTCTAAAGGTCAGATTCCCATTCTGTGGACA
TTTTTATTATACACATCCTTTGTCTTCTGTTAGTCACATCATCCTAGTTA
TTTCCCAGCATGCTATAGACTTTTCCTAGAAAGGAATTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACCGCCCCGGGTGCCTTGTGCGCTCGCGGC
TCCTCACCTGTTCCGCCGACACCGCCCCCTTCCCCGCGCCGCTCCCGCCG
CTCTTGCCCACACGACCGCTGCTGTCCGCCATCTTCCCCACCTGCAAGCT
TTCCGGCCTGCGCACTCTCACTGCGTCACATCCGGCCGGGGGGTTACCGC
CCACTTGCTCCTGCGCTCCTGGCTCCTGGCAGCTCTTGAGATCCGACCCC
GTGAATGGTTTTGGCTGTGTCTTCATGTAGGACCTACTCCCAAACCCTGC
CCGCTGCGGTGAATTCCACCTGCGATGCTTTAACTTGTGCAACAGAGATT
CTTGCCCGGGGGGGAGAGGCGGGGAAGGACGCGCTAATCAGAGGGCGGGG
GCTCGGGTTGGGATCTGGTCCTGTACCCATCTACCCACCATGAGATGGTG
GAGATCTAGGGAGGGTGAACTTTCCTTCTGAGATTCGGGTATAAGGGGAA
AGATACGTGTTGAGTCTATAAAGCTGTGCAGGTGGCACAGCCGAGAAGAG
AATTGGGGAAACGAGGAAGGTTCCATGAGATGACTTGAACTGCGGAAACG
TTTGGCAAAGGAAAAAGGGCTTCAGTTTTAATGTGAGATCACTGGAAGTT
GAGGTATTAAGGCACCGATCATAGTCGCCTCTCCCATTTTCCCATTTTAT
ATCTTTTCCCAGCTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_j15.b1 MSMg01no481_j15.b1 CHROMAT_FILE:
MSMg01no481_j15.b1 PHD_FILE: MSMg01no481_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:17 2005
         (675 letters)



>mm_chr1_173095116_173096190
          Length = 1075

 Score = 1305 bits (675), Expect = 0.0
 Identities = 675/675 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacagaatgggttccagggcttttacacagaaaaactctgtctcagaaaaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacagaatgggttccagggcttttacacagaaaaactctgtctcagaaaaaaaaaaaaa 260

                                                                       
Query: 61  ttaaatgagttaatatgtgtgaaagtgcctggaaaggggactgagccacaggggtacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatgagttaatatgtgtgaaagtgcctggaaaggggactgagccacaggggtacttt 320

                                                                       
Query: 121 acaagtctctcttacctctcatggcctatctgtagcatgagactcaagtatcaccccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagtctctcttacctctcatggcctatctgtagcatgagactcaagtatcaccccaac 380

                                                                       
Query: 181 ctagggaatgaagatctcagagggccctaactatgaaaccttctaagtcaacagaattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagggaatgaagatctcagagggccctaactatgaaaccttctaagtcaacagaattca 440

                                                                       
Query: 241 acccagcaaagaataatcacagctgacctggtcattggtccattgcatccttagattctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccagcaaagaataatcacagctgacctggtcattggtccattgcatccttagattctg 500

                                                                       
Query: 301 acacagcctccccccttgacaaatgaggacactgagtcatggagacatttattaactttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacagcctccccccttgacaaatgaggacactgagtcatggagacatttattaactttg 560

                                                                       
Query: 361 ccaaggcacaatggtcactgaactaagactagaactcaggacctagcactaagaggacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaggcacaatggtcactgaactaagactagaactcaggacctagcactaagaggacac 620

                                                                       
Query: 421 tgagggacgggattcatgcacctatctgtcacactggtttctaagtgtgtgagcttttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagggacgggattcatgcacctatctgtcacactggtttctaagtgtgtgagcttttgg 680

                                                                       
Query: 481 ccaccttcaccatttgactgctggcttctggaaataccagcaatgacatcatgctcggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaccttcaccatttgactgctggcttctggaaataccagcaatgacatcatgctcggag 740

                                                                       
Query: 541 actcaaactatgtttctaaaggtcagattcccattctgtggacatttttattatacacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actcaaactatgtttctaaaggtcagattcccattctgtggacatttttattatacacat 800

                                                                       
Query: 601 cctttgtcttctgttagtcacatcatcctagttatttcccagcatgctatagacttttcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctttgtcttctgttagtcacatcatcctagttatttcccagcatgctatagacttttcc 860

                          
Query: 661 tagaaaggaattttt 675
           |||||||||||||||
Sbjct: 861 tagaaaggaattttt 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_j15.g1 MSMg01no481_j15.g1 CHROMAT_FILE:
MSMg01no481_j15.g1 PHD_FILE: MSMg01no481_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:17 2005
         (633 letters)



>mm_chr1_173275123_173276155
          Length = 1033

 Score = 1224 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccgccccgggtgccttgtgcgctcgcggctcctcacctgttccgccgacaccgccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 caccgccccgggtgccttgtgcgctcgcggctcctcacctgttccgccgacaccgccccc 774

                                                                       
Query: 61  ttccccgcgccgctcccgccgctcttgcccacacgaccgctgctgtccgccatcttcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ttccccgcgccgctcccgccgctcttgcccacacgaccgctgctgtccgccatcttcccc 714

                                                                       
Query: 121 acctgcaagctttccggcctgcgcactctcactgcgtcacatccggccggggggttaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 acctgcaagctttccggcctgcgcactctcactgcgtcacatccggccggggggttaccg 654

                                                                       
Query: 181 cccacttgctcctgcgctcctggctcctggcagctcttgagatccgaccccgtgaatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cccacttgctcctgcgctcctggctcctggcagctcttgagatccgaccccgtgaatggt 594

                                                                       
Query: 241 tttggctgtgtcttcatgtaggacctactcccaaaccctgcccgctgcggtgaattccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tttggctgtgtcttcatgtaggacctactcccaaaccctgcccgctgcggtgaattccac 534

                                                                       
Query: 301 ctgcgatgctttaacttgtgcaacagagattcttgcccgggggggagaggcggggaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctgcgatgctttaacttgtgcaacagagattcttgcccgggggggagaggcggggaagga 474

                                                                       
Query: 361 cgcgctaatcagagggcgggggctcgggttgggatctggtcctgtacccatctacccacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cgcgctaatcagagggcgggggctcgggttgggatctggtcctgtacccatctacccacc 414

                                                                       
Query: 421 atgagatggtggagatctagggagggtgaactttccttctgagattcgggtataagggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atgagatggtggagatctagggagggtgaactttccttctgagattcgggtataagggga 354

                                                                       
Query: 481 aagatacgtgttgagtctataaagctgtgcaggtggcacagccgagaagagaattgggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagatacgtgttgagtctataaagctgtgcaggtggcacagccgagaagagaattgggga 294

                                                                       
Query: 541 aacgaggaaggttccatgagatgacttgaactgcggaaacgtttggcaaaggaaaaaggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aacgaggaaggttccatgagatgacttgaactgcggaaacgtttggcaaaggaaaaaggg 234

                                            
Query: 601 cttcagttttaatgtgagatcactggaagttga 633
           |||||||||||||||||||||||||||||||||
Sbjct: 233 cttcagttttaatgtgagatcactggaagttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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