TTTCGCGAAACACCCAATTCAAATACGGATCCGGTATCCTCAATTCCACA
CTGGCATCTCACTCTCTGGTTCGATCTTCTCTATCTCGGAGTCTCTAGGT
TTGCTGATCCCTACAGACTAAGTGTAGGGGTATTGACCCCCACCTGTCCA
AAAAACCTTGGAAAAAAACCTTTTTGGGANNAAANNNAAATCCCTTATTC
CCCCCAAATTTTTTTTCTCACCACCCCCCCCCCCCCTAAAAAACCCNNTT
TTTCCTTATATTTTTAGTTTTTANNNNNNNAANNNNNNNGGGGGGATCTT
TTGTTGGGGGGCGGGGCGGGGGGGGGGGGCGGCTGGGGGGGGGGGGGGGG
NNCNNNAATTAAAAAAANNNNNNNNGGGGGGGCGGGGGGGGGGCGGGGGG
GCGGGGGGGGGGCGGGGGCNNNNNNNATTAANAANNATNATAGAGAGGCT
AAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAATGCAATTACTGGCATGGAGACATATAT
CCTTTTAAAAAGTAAATAATTGAGTTCTAAATCAATATGTTCTCTGGTGG
AGAAAACAGGCAGAGAGTCAAAGCAAAGCACTCTATAGAATCTATACATT
TCACAATGGCTAGCTGGGTAACAGTTATTAATACAATAAGGGAAGAAAGG
AGAGCTGGTAAAATGTCAAAAACAAATGAGGAATTTGTTTTCCAGAAATA
ACATCAATTAAGAAGAAGGTAAGAATCTCGGGCGTGGTGGCGCAGGCCTT
TAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGC
CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAGACAAAC
CCTGTCTACAGAGAAACCCTGTCTCGAAAAAACAAAAAACAGAAAAAGAA
GAAGAAGAAGGTAAGAGCCTAGACAGAAGTGGGGAAAAGCTGGAGAGCAG
TGAACTGAATTGAGGGCTCTGACAGAGGTGTGGGAGGGGCAGACCACTGA
GTCTGACCACACTCCAATGAGTATATAGATAACACAAAGTGGACTGTTTT
TAAAGTCTTGTTTTAATTTTTACTTTCTTTGGGGGAGGTCACAAAGGGAG
AAGACAGGGAAGGACTGGGAAGTGACTATGATAGATGCATGATGGGAAGA

Query= MSMg01no481_j24.g1 MSMg01no481_j24.g1 CHROMAT_FILE:
MSMg01no481_j24.g1 PHD_FILE: MSMg01no481_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:19 2005
         (632 letters)



>mm_chr1_153342261_153343292
          Length = 1032

 Score = 1168 bits (604), Expect = 0.0
 Identities = 622/632 (98%), Gaps = 8/632 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcaattactggcatggagacatatatccttttaaaaagtaaataattgagttctaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcaattactggcatggagacatatatccttttaaaaagtaaataattgagttctaaat 260

                                                                       
Query: 61  caatatgttctctggtggagaaaacaggcagagagtcaaagcaaagcactctatagaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatatgttctctggtggagaaaacaggcagagagtcaaagcaaagcactctatagaatc 320

                                                                       
Query: 121 tatacatttcacaatggctagctgggtaacagttattaatacaataagggaagaaaggag 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tatacatttcacaatggctagctgggtaacagttatcaatacaataagggaagaaaggag 380

                                                                       
Query: 181 agctggtaaaatgtcaaaaacaaatgaggaatttgttttccagaaataacatcaattaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctggtaaaatgtcaaaaacaaatgaggaatttgttttccagaaataacatcaattaag 440

                                                                       
Query: 241 aagaaggtaagaatctcgggcgtggtggcgcaggcctttaatcccagcacttgggaggca 300
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaggtaagaagc-cgggcgtggtggcgcaggcctttaatcccagcacttgggaggca 499

                                                                       
Query: 301 gaggcaggcggatttctgagttccaggccagcctggtctacagagtgagttccaggacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaggcaggcggatttctgagttccaggccagcctggtctacagagtgagttccaggacag 559

                                                                       
Query: 361 ccagggctacagacaaaccctgtctacagagaaaccctgtctcgaaaaaacaaaaaacag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 560 ccagggctacagacaaaccctgtctacagagaaaccctgtctcgaaaaaacaaaaaa--- 616

                                                                       
Query: 421 aaaaagaagaagaagaaggtaagagcctagacagaagtggggaaaagctggagagcagtg 480
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ----agaagaagaagaaggtaagagcctagacagaagtggggaaaagctggagagcagtg 672

                                                                       
Query: 481 aactgaattgagggctctgacagaggtgtgggaggggcagaccactgagtctgaccacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aactgaattgagggctctgacagaggtgtgggaggggcagaccactgagtctgaccacac 732

                                                                       
Query: 541 tccaatgagtatatagataacacaaagtggactgtttttaaagtcttgttttaattttta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tccaatgagtatatagataacacaaagtggactgtttttaaagtcttgttttaattttta 792

                                           
Query: 601 ctttctttgggggaggtcacaaagggagaaga 632
           ||||||||||||||||||||||||||||||||
Sbjct: 793 ctttctttgggggaggtcacaaagggagaaga 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)