Query= MSMg01no481_k02.b1 MSMg01no481_k02.b1 CHROMAT_FILE:
MSMg01no481_k02.b1 PHD_FILE: MSMg01no481_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:19 2005
(125 letters)
>mm_chr1_159508543_159509063
Length = 521
Score = 205 bits (106), Expect = 7e-58
Identities = 118/122 (96%), Gaps = 4/122 (3%)
Strand = Plus / Minus
Query: 1 tattaaacaaagaaccaagtttctcggaagacatgcaaatgatatgtgacagcatcactg 60
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 318 tattaaacaaagaaccaagtttc-cggaagacatgcaaatgata-gtgacagcatcact- 262
Query: 61 ggaaagggagtgagcatggtgggccgagggggatgtctgggggtgggtaagggaaggctg 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaagggagtgagcatgg-gggccgagggggatgtctgggggtgggtaagggaaggctg 203
Query: 121 ga 122
||
Sbjct: 202 ga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 521
Length adjustment: 8
Effective length of query: 117
Effective length of database: 513
Effective search space: 60021
Effective search space used: 60021
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no481_k02.g1 MSMg01no481_k02.g1 CHROMAT_FILE:
MSMg01no481_k02.g1 PHD_FILE: MSMg01no481_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:19 2005
(491 letters)
>mm_chr1_159336415_159337305
Length = 891
Score = 888 bits (459), Expect = 0.0
Identities = 483/491 (98%), Gaps = 1/491 (0%)
Strand = Plus / Plus
Query: 1 aagatctccctccctcactcttcccaatgctgggattacagatacgtatgaccacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aagatctccctccctcactcttcccaatgctgggattacagatacgtatgaccacacaca 261
Query: 61 gtcgttaaagaacttaatacccataaattaatacatgaatttggaggaactaggataatg 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 gtcgttaaagaacttaataaccataaattaatacatgaatttggaggaactaggatgatg 321
Query: 121 gctcggtgggttagaacgctttctccgcaaggatgaggaactgatttcaaatccacagca 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gctcggtgggttagaacactttctccgcaaggatgaggaactgatttcaaatccacagca 381
Query: 181 ctcacatacactccagacatggctgtatggctgtgacttcagcactgtaggcagagacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcacatacactccagacatggctgtatggctgtgacttcagcactgtaggcagagacag 441
Query: 241 gcaggtctcagattatttaactggccatctgagcagccagtctagcaaaacctagctata 300
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcaggtctcagag-aggtaactggccatctgagcagccagtctagcaaaacctagctata 500
Query: 301 tgctctgtgataggcaatgtctcaaggcaataaagagcccacatctagttctggccccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctctgtgataggcaatgtctcaaggcaataaagagcccacatctagttctggccccca 560
Query: 361 taaatgcacacatatatacaaatgaatttggacaacattcagaacctatgccagattata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatgcacacatatatacaaatgaatttggacaacattcagaacctatgccagattata 620
Query: 421 agtactgaactcaagcctaagactcaaagaacttctaaaatattagtacttgtttgtgat 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 agtactgaactcaagcctaagactcaaagaacttgtaaaatattagtacttgtttgtgat 680
Query: 481 agcttaactaa 491
|||||||||||
Sbjct: 681 agcttaactaa 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
