NAAAATCGCNNCNCNANNNNNNNNNNATTTTCAAACATCCGCGGAGTCCT
AAGTGTCGCTAAATTCTTATCANTCATTCACACACACAAACTTACAAGTT
GGGAGAGAGTATGTCGGGTGTGCGTGCCTAANNNANNTNNNNTANANANT
TTCCNAAANTTTTAATANATATTTACCTCCCTTATTTTCNNTTCAATANA
NAANCTCTTTACCCNTTCTNCCCACCCTNTTNTTNAAAANNNNACTAAAA
CCCCTCCNAAATNNANCCCAAANNNNNAAAAAAAATTTTTTTTTTCCCTN
CCCCCCNNTNACCCCCNNTTTNNNAANTTTNAAAATTCCCTTTTTTTTTT
TTNAAANNNAAAANNCCCCAATTTTTATACCCCAANNNNNCTTTCTNNNC
CTNAAAAATTNNAAACCCCCNNNNTCTCCCCCAAAAAAAAAAAANTTTNT
NNNAAACTTTTTTTCTTTTTTAAAAAAANCTNNNNNNNTNTTTTTTTATT
CCCTCTTTTTNNNNNNNCTTTTTTTTTCAAACCATTNNNNNNNNTNNNNN
NANNANNNNNNACCCCNNNNCTCTCCCTCCCCCAACNCTATTTTTTCTCT
NNCAAAATCCNCNCCCTCTTTCCCTCTTCAAAAAATTTTTTTTTTTTTNN
NNNTTATCNNNNNNNNNNNNNNNNTNTNNNNNTCCCCNNNTTNTCNNNAA
TANTCTTTTTTTATTTTTACTCTTTCTTCCTTTTTTCAATACTATAATAG

GCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTACAGGTTCATGCTTAGTTAACTTT
CTTATAAAGCCCTGAACTACTTGCCCAGGGAGCAGTGCTGGTCCACAGTG
TGTGTGATCCTCATACACCAATTCACAACGAAGACAGATTTCTCACAGCC
ATGCCCATGAACCAATGTGTCAAAGGCAACTAACTGTTCAGCTCAAACCC
ATTTCAAGTGACCCCAGGTTATGTCACTTTGACAGTGCTAAGACAGTGAC
CAAGGCTTCCATTAGGACTTGTGGGTGAGCTTTGGCAGTGTCCTCAAGCC
AGGTTACACATTGTGCTTAGAAAAGAAGGGACGCTTCCGCACTCTGTCCA
AAGCAAACAACTGTTTCCTTAGGTGAGCACAGAAAGTGAAAATTCTTCTT
CTCACGTGAAAGACATCTCCTTCTTGGGTCTTGTTGCCAGCCCCATACCC
AGTTGCTGCCTCTCCCCTCGTGGTTTATATTCCAGGATGTACTTGGCATT
CTCAACTTGTCTGGGTAGCATGTAGCTCCTGAAAATCACACCCGCTATCC
TGAGCATCCTTGTGTGTATCCCTCATGGAACACAGGATCCATTCCTGAGC
TCTGCTCTGGCAATTTTCCTTTCCCATTAATCCATTTCATCATACCCGTG
CTGAAGAAAGATTCTCTCCTTTGGACTTCCATTC

Query= MSMg01no481_m19.g1 MSMg01no481_m19.g1 CHROMAT_FILE:
MSMg01no481_m19.g1 PHD_FILE: MSMg01no481_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:33 2005
         (555 letters)



>mm_chr1_42665625_42666580
          Length = 956

 Score =  951 bits (492), Expect = 0.0
 Identities = 534/548 (97%), Gaps = 5/548 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  atgcttagttaactttcttataaagccctgaactacttgcccagggagcagtgctggtcc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 atgcttagttaactttcttataaagccctgaactacttgcccagggagcagtgctggtcc 897

                                                                       
Query: 71  acagtgtgtgtgatcctcatacaccaattcacaacgaagacagatttctcacagccatgc 130
           |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||
Sbjct: 896 acagtgtgtgtgatcctcgtacatcaattcacaatgaagacagatttctcacagccatgc 837

                                                                       
Query: 131 ccatgaaccaatgtgtcaaaggcaactaactgttcagctcaaacccatttcaagtgaccc 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ccatgaaccaatgtgtcaaaggcaactaactgttcagctcaaacccatttcaagtgaccc 777

                                                                       
Query: 191 caggttatgtcactttgacagtgctaagacagtgaccaaggcttccattaggacttgtgg 250
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 caggttatgtcacattgacagtgctaagacagtgaccaaggcttccattaggacttgtgg 717

                                                                       
Query: 251 gt-gagctttggcagtgtcctcaagccaggttacacattgtgcttagaaaagaaggga-c 308
           || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 716 gtggagctttggcagtgtcctcaagccaggttacacattgtgcttagaaaagaa-ggagc 658

                                                                       
Query: 309 gcttccgcactctgtccaaagcaaacaactgtttccttaggtgagcacagaaagtgaaaa 368
           ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 657 gcttcagcactctgtccaaagcaaacaactgtttccttaggtgagcacagaaggtgaaaa 598

                                                                       
Query: 369 ttcttcttctcacgtgaaagacatctccttcttgggtcttgttgccagccccatacccag 428
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 597 ttcttcttctcaggtgaaagacatctccttcttgggtcttgttgccagccccatccccag 538

                                                                       
Query: 429 ttgctgcctctcccc-tcgtggtttatattccaggatgtacttggcattctcaacttgtc 487
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttgctgcctc-ccccttcgtggtttatattccaggatgtacttggcattctcaacttgtc 479

                                                                       
Query: 488 tgggtagcatgtagctcctgaaaatcacacccgctatcctgagcatccttgtgtgtatcc 547
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgggtagcatgtagctcctggaaatcacacccgctatcctgagcatccttgtgtgtatcc 419

                   
Query: 548 ctcatgga 555
           ||||||||
Sbjct: 418 ctcatgga 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 956
Length adjustment: 10
Effective length of query: 545
Effective length of database: 946
Effective search space:   515570
Effective search space used:   515570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)