GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTCTTTCCCTAAAGGGAGATTCTGCTGGTAGCCATGCCAA
GTTCAGTTGTATGTTTTATTACACATAGCAGCAGCTTGCAACTGCCATGG
GTAACTAGTGCTTGTTGGCAGTTTTGTCCTGTATTTGCTATTTTCAAAGA
ATGTATCATATAGTGTAGACCTTGAACAACTGTTAGCGTGTTCCCATACT
CACAGAACAGACCCTACTCATCAAGCAGGGACACTACCAGATATTACATA
AAAGACAACCATCTATGCCTCCTGCAGTAGACACTCCAACTTCAGATGGC
TTAGTGTTAGTTATATGTCTTTCTCCCCATAGGAAGGCCCATGTAATTCT
GCCATAACAACAAGATATTATATTCCATAAAGGGAGAGAGAAGCTACTTG
CTGGTGATATGCAAACAAATATTTACTCACGCCAAATAGTGTTCTAGTGA
CAGTCCAGAGTACCATTCCATCAAAGTCTAGCATAGTGAACTGATGAGTT
CATTTTGTTGGCTTACTCAGCATGGGCTAATACCCCATCTCTAGAATCCT
ATAGATTATAGGAAGAGAGGTTGCTTCTAGGAGTGTGGGTACGCCATCAG
TGCTGATGACCTTATGGAAACTGTATCATGGAGTCCTCCTTTTGGTTAGC
AGCTTACAGCTTTCTAAAACTCCAGTTCTGAGGGTTCTGTCTCTCTCTTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACCTGCGTACAAGGCTT
GTTTACTAGTTAGGCACAGCAGAGGCCCGCGCCATCTTATAATGGCGATT
GCTCGCGGCACACACGGCTCTCCTCAGAGATTACTGGTAGCATGCACGCA
ATTGCTCACAGCACATACCGGCTCTCCACACACTATGCTCATAGCAGCCT
TATTTATAATAGCCAGCAGCTGGAAATAACCCAATGTGCCTCAACAGAAG
AATGGATACAGAAAATGTGGTGCATTTACACAGTGAAGTACTACTCACCT
ATTAAAAACAATGAACTCATGAAATTCTTAAGCAAATGAATGGAACTAGA
AAATATCATCCTGAGTGAGGTAACCCAAACACAAAGGAACACACATGGTA
AGTGGATATCAGCCCAAAAGCTCAGAATACTCAAGATACAACTCACAGAC
CACATGAAGCTCAAGAAGAAAGGCCAAATTGTGGATTCTTCGGTCCTTCT
TAGAAGGGGAAACCAAACACTCACAGGAGGAAACATGGAGACAAAGTGTT
GAGCAGAGACTGAAGGAAAAGCCATCCAGATACTGCCCCACATGGGGATC
TATTCCATATACAGTCATCAACCTCAGACACTATTTTGGATGCCAACAAG
TGCTTGCTGACAGAAGCCTTATATATCTGG

Query= MSMg01no482_e07.b1 MSMg01no482_e07.b1 CHROMAT_FILE:
MSMg01no482_e07.b1 PHD_FILE: MSMg01no482_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:09 2005
         (678 letters)



>mm_chr1_5130502_5131579
          Length = 1078

 Score = 1007 bits (521), Expect = 0.0
 Identities = 671/809 (82%), Gaps = 136/809 (16%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttc-tt-tccctaaagggagattctgctggtagccatgccaagttcagttgt 61
           ||||||||||| || |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ggaattctttccttata--taaagggagattctgctggtagccatgccaagttcagttgt 129

                                                                       
Query: 62  atgttttattacacatagcagcagcttgcaactgccatgggtaactagtgcttgttggca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atgttttattacacatagcagcagcttgcaactgccatgggtaactagtgcttgttggca 189

                                                                       
Query: 122 gttttgtcctgtatttgctattttcaaagaatgtatcatatagtgtagaccttgaacaac 181
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gttttgtcccgtatttgctattttcaaagaatgtatcatatagtgtagaccttgaacaac 249

                                                                       
Query: 182 tgttagcgtgttcccatactcacagaacagaccctactcatcaagcagggacactaccag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgttagcgtgttcccatactcacagaacagaccctactcatcaagcagggacactaccag 309

                                                                       
Query: 242 atattacataaaagacaaccatctatgcctcctgcagtagacactccaacttcagatggc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atattacataaaagacaaccatctatgcctcctgcagtagacactccaacttcagatggc 369

                                                                       
Query: 302 ttagtgttagttatatgtctttctccccataggaaggcccatgtaattctgccataacaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttagtgttagttatatgtctttctccccataggaaggcccatgtaattctgccataacaa 429

                                                                       
Query: 362 caagatattatattccataaagggagagagaagctacttgctg----------------- 404
           |||||||||||||||||||||||||||||||||||||||||||                 
Sbjct: 430 caagatattatattccataaagggagagagaagctacttgctgagactgccttcatgggt 489

                                                                       
Query: 404 ------------------------------------------------------------ 404
                                                                       
Sbjct: 490 ggtctaccctcagcttgcagtctaaagcaaggacagtgcaattgcgcctcccaaagttac 549

                                                                       
Query: 405 -------------------------------------------------------gtgat 409
                                                                  |||||
Sbjct: 550 ctttagttttatcacaccctgtgtgttgggtgcagagttgtgctaacttttcttggtgat 609

                                                                       
Query: 410 atgcaaacaaatatttactcacgccaaatagtgttctagtgacagtccagagtaccattc 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atgcaaacaaatatttactcacgccaaatagtgttctagtgacagtccagagtaccattc 669

                                                                       
Query: 470 catcaaagtctagcatagtgaactgatgagttcattttgttggcttactcagcatgggct 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 catcaaagtctagcatagtgaactgatgagttcattttgttggcttactcagcatgggct 729

                                                                       
Query: 530 aataccccatctctagaatcctatagattataggaagagaggttgcttctaggagtgtgg 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aataccccatctctagaatcctatagattataggaagagaggttgcttctaggagtgtgg 789

                                                                       
Query: 590 gtacgccatcagtgctgatgaccttatggaaactgtatcatggagtcctccttttggtta 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gtacgccatcagtgctgatgaccttatggaaactgtatcatggagtcctccttttggtta 849

                                        
Query: 650 gcagcttacagctttctaaaactccagtt 678
           |||||||||||||||||||||||||||||
Sbjct: 850 gcagcttacagctttctaaaactccagtt 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)