BAC Information

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BAC

Clone NameMSMg01-482G01
Chromosome1 (Build37)
Map Location 20,766,663 - 20,766,900
singlet/doubletsinglet
Overlap genenone
Upstream genePkhd1, Il17a
Downstream geneIl17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482G01.T7 (MSMg01no482_g01.b1)MSMg01-482G01.TJ (MSMg01no482_g01.g1)
ACCAG562557AG562558
length680677
length of high quality
(start - end)
239 (49 - 287)234 (58 - 291)
definitionCHROMAT_FILE: MSMg01no482_g01.b1 PHD_FILE: MSMg01no482_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:16 2005CHROMAT_FILE: MSMg01no482_g01.g1 PHD_FILE: MSMg01no482_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACCATGCCCACGGCACCGCGGAATTCCCTNATCCCCACTACCCTTAA
CTCTCTTTCTAAGTGTAACGGGACCTCAGTTCCATTAGTAACAATAACTC
TAACACGGGAGCTCTGAGGAGGAAATTTGGAAAAACAAATGATATACAGA
TGTTCAAAATGTTGAGGGTTGTAAAGTCTTGGAGTTCAAGCTGAAGGCAG
AAGCAAATACTTGTCTAGCTGCTTTCTGTGCTGCCATGTTAAACACCATG
AACAAAACCAACTTAGAGGGGAACGGAATTGTTACGCTTATTTTTTTCCA
TCACGGAGGGAAGCTTTGGCAGGAACTTAATGCATGACCTAAAGCAGATA
TGATGACAGAGTGCTGCTCAGTAGCTTCCTCTCCATGGTCTGCCCAGCTT
GTTTTCTTATATAACTCAGGACCACCTCCCCACAACAGACACCACCCACA
ATGGGCTAGGTCCTCTCGAAACCACCATTAACCAAGAAAATGCCCCCCAG
ACATGCCCAGAGACCAATCTGATAGGGGCAATTCCCCCACTAAGCTTTCC
TCTTGCCAGGTGGCTCAAGCATATACCACATTAACAAAAACTAACCATCA
CAGACTTCTAATATTTTTGAACTAAAAATATCTTATTACCTACTTACCGG
AAATATTAATTTTTTACCAAATTGATATCT
GCCCGAAGGTGCAANTGANGTGANACANACCAGGTGAGTTCATTTGCCTG
AANGGANGGACTAAAGGGTGGCTGGGAACTGGGAAAGCTATAGATGATAA
AATTAAGTTACCACTAAAAAAGAACAGGGAGGGGGCCTTGTAAAAAGTTT
TTTTTTGTTTTGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GGTTTTTTTCCCCATGTATGGGTTTTTGCTTGCAGGGATGTCTGTGTGCC
ATGAGTGTACAGTTCCTGAGGAAGCCAGAAGAGGGCACCATTTTTCGTTG
AACTGGAGTTACAGGTCATTAGGAGCCACCACTTTGTTGCTGGGAATTAA
ACACTTTGTGTGCTATCTGTACTTTCATTTGTCTTGAGCTCCCTAACTGG
GGCCAGCAGACATTTATTCACAGCTTCCCATGGATAGCGCAACACAATAT
TACACGCATGTATGTGCTAGCACACACACAATTGTGCATGCTCAGGCATG
TGAAAGCCATGGGACAACCTCTTAGTTGGCTACTTCCTTTTTACACTCGA
TCCCCTCTGTAACCTGGATATTTCCTCATCACGTGTGACTGGTTATTAAT
CCTTAGTGCTCCTCCTGTTCTCCAATAATTTCTTTTTTGTCCTGCCCCGG
CGTCTTTTTCTTTTAATTTTTCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_g01.b1 MSMg01no482_g01.b1 CHROMAT_FILE:
MSMg01no482_g01.b1 PHD_FILE: MSMg01no482_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:16 2005
         (239 letters)



>mm_chr1_20766463_20767101
          Length = 639

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactctctttctaagtgtaacgggacctcagttccattagtaacaataactctaacacgg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 201 aactctctttctaagtgtaacgggacctcagttccattaataacaataactctaacatgg 260

                                                                       
Query: 61  gagctctgaggaggaaatttggaaaaacaaatgatatacagatgttcaaaatgttgaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctctgaggaggaaatttggaaaaacaaatgatatacagatgttcaaaatgttgaggg 320

                                                                       
Query: 121 ttgtaaagtcttggagttcaagctgaaggcagaagcaaatacttgtctagctgctttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaaagtcttggagttcaagctgaaggcagaagcaaatacttgtctagctgctttctg 380

                                                                     
Query: 181 tgctgccatgttaaacaccatgaacaaaaccaacttagaggggaacggaattgttacg 238
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 381 tgctgccatgttaaacaccatgaacaaaaacaacttagaggggaatggaattgttacg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)