XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAT
TTTTATGATAACAAATACAAGGGAGTAAAATTATTCAAATTTGAGCATTT
CTTTCCACAGTTTTGGGAATGTAAATTTATATTCCTCTTAAAGAAGCTAA
TGATGTTGCAGGCAGGGAAAATATCCTACGTGTCTTAACAAAAACAGACA
GGAATTGTGCTGAGAAATATGATGTTGTATCATAAATTCAGTTTATTTTT
GTCAAAATAGAAGAAAATCTAGCCAATCTTTTAAATATCAAAGGATTATG
GCCAATTCTATCAGCTTCTATGCTCAATTTGTTTAATCTCTGTAAATAAA
TTTTAACTAATTCTATTTTTCTGTCAGTTCCACAGCCAACAAGTTTTTAA
GATTCATTGTCTACCATATGTTACTACAAAAAAGTTTTCCAGAAGGAGAT
TTGAATTTTGAGATCAGAGTCTTATCTATCCATATGTGAAAAACATCTGC
TCTTCCTTAAGGACAGCCAATGTCTATGTTAAGTATCTATTCAGGTCCTC
AAGATTTCATAGAGCATTAATAAAAGAAATATTTCATATAATATCTATAA
ATATGTTCTAAAATAGTTTGTTAAAGAAGTAGGATATCTTTAGCAAATGG
GAAACCCATGAAGCAAAATGTCTTAAATGCACAGCCCTCTTTAATTGAAT

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAATTGAGGAATCTCAAATGGCTGA
GGATCATGTAAAGAAATGTTCAATGTCCTTAGTGATCAGAGAAATTGAAA
TCAAAATGACCCTGAGATTTCACCTTACACCAATCAGAATGGCTAAAATC
AAAATCTCAGTTGACAACACATGTTGGAGAGGATGTGAAGAAAGAGGAAC
ACGCCTCCATTGCAGGTGGGGTTGCAAGCTGGTACAATCACTCTGGAAAT
CAATCTGGAAATTCGTCCAAAGATTTGAAATAGATCTACCTGGAGACCCA
GTTATACTACTCTTGGAAATTTACCCAAAAGATTCCCCATCATGCCATAG
GGGCACGTGTTCCACTATGTTCATATCAGCCATATTTGTGATAGCCAGAA
GGTGGGAGCAACCTCAATGTCATATGACAGAAGAGTGGATACAGAAAATG
TGGTTCATTTACACAATGGAATATACTCAGCTATTAAGAATGAGGACACC
CTGACATTTGCAGACAAGTGGATACAACTATGAAATATCTCCTGAGTGAG
GTAACTCATTCCCAAAAATGGCACGCATAGTATGTGCTCACTAATAAGTG
GATATTAGCCAAAAATAAAATAAAATAACAGAATACACAAGATACAGTCC
ACAGAACTCACAAAGCTCAACAAGCTGAAGTGCCCAACTGAGGATGCCTC
AGTCCCA

Query= MSMg01no482_h20.b1 MSMg01no482_h20.b1 CHROMAT_FILE:
MSMg01no482_h20.b1 PHD_FILE: MSMg01no482_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:24 2005
         (665 letters)



>mm_chr1_149695834_149696898
          Length = 1065

 Score = 1247 bits (645), Expect = 0.0
 Identities = 657/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatttttatgataacaaatacaagggagtaaaattattcaaatttgagcatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatttttatgataacaaatacaagggagtaaaattattcaaatttgagcatt 264

                                                                       
Query: 65  tctttccacagttttgggaatgtaaatttatattcctcttaaagaagctaatgatgttgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttccacagttttgggaatgtaaatttatattcctcttaaagaagctaatgatgttgc 324

                                                                       
Query: 125 aggcagggaaaatatcctacgtgtcttaacaaaaacagacaggaattgtgctgagaaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcagggaaaatatcctacgtgtcttaacaaaaacagacaggaattgtgctgagaaata 384

                                                                       
Query: 185 tgatgttgtatcataaattcagtttatttttgtcaaaatagaagaaaatctagccaatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatgttgtatcataaattcagtttatttttgtcaaaatagaagaaaatctagccaatct 444

                                                                       
Query: 245 tttaaatatcaaaggattatggccaattctatcagcttctatgctcaatttgtttaatct 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaaatatcaaaggattatggccatttctatcagcttctatgctcaatttgtttaatct 504

                                                                       
Query: 305 ctgtaaataaattttaactaattctatttttctgtcagttccacagccaacaagttttta 364
           |||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 505 ctgtaaataaatcttaactaatcctatttttctgtcaggtccacagccaacaagttttta 564

                                                                       
Query: 365 agattcattgtctaccatatgttactacaaaaaagttttccagaaggagatttgaatttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agattcattgtctaccatatgttactacaaaaaagttttccagaaggagatttgaatttt 624

                                                                       
Query: 425 gagatcagagtcttatctatccatatgtgaaaaacatctgctcttccttaaggacagcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagatcagagtcttatctatccatatgtgaaaaacatctgctcttccttaaggacagcca 684

                                                                       
Query: 485 atgtctatgttaagtatctattcaggtcctcaagatttcatagagcattaataaaagaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtctatgttaagtatctattcaggtcctcaagatttcatagagcattaataaaagaaa 744

                                                                       
Query: 545 tatttcatataatatctataaatatgttctaaaatagtttgttaaagaagtaggatatct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatttcatataatatctataaatatgttctaaaatagtttgttaaagaagtaggatatct 804

                                                                       
Query: 605 ttagcaaatgggaaacccatgaagcaaaatgtcttaaatgcacagccctctttaattgaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttagcaaatgggaaacccatgaagcaaaatgtcttaaatgcacagccctctttaattgaa 864

            
Query: 665 t 665
           |
Sbjct: 865 t 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)