Query= MSMg01no482_k12.b1 MSMg01no482_k12.b1 CHROMAT_FILE:
MSMg01no482_k12.b1 PHD_FILE: MSMg01no482_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:37 2005
(648 letters)
>mm_chr7_36948631_36949678
Length = 1048
Score = 1093 bits (565), Expect = 0.0
Identities = 633/671 (94%), Gaps = 27/671 (4%)
Strand = Plus / Plus
Query: 5 gaattcttccttagcactaagaactgacgagccatgctcaagataacacattttccccgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaattcttccttagcactaagaactgacgagccatgctcaagataacacattttccccgg 237
Query: 65 tacctgaaagttattttggcttcacttttttctaattgttacaatcttttcaacatcctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tacctgaaagttattttggcttcacttttttctaattgttacaatcttttcaacatcctc 297
Query: 125 cccccaatgcacacacacgc----g------------cgcacac----------acacac 158
||||||| |||||||||||| | ||||||| ||||||
Sbjct: 298 cccccaacgcacacacacgcacacggacacacacacacgcacacggacacacggacacac 357
Query: 159 acacacacacacacacacacacacacacacacatacacacacacggcagctatataggaa 218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 358 acacacacacacacacacacacacacacacacacacacacacacggcagctatataggaa 417
Query: 219 atggaaggaaatcagatcccattgcctgcaacttagggcccagccacaa-gagtctgagc 277
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 418 atggaaggaagttagatcccattgcctgcaacttagggcccagccacaaagagtctgagc 477
Query: 278 tctctgcttagattctaattaaaactgtagcacatctgtagagcaaaagaacaagttgaa 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tctctgcttagattctaattaaaactgtagcacatctgtagagcaaaagaacaagttgaa 537
Query: 338 caggctggcatcttaaaaacgtgtgtatacatatacgtatatgtatacatatatgtgtgc 397
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 538 caggctggcatcttaaaaatgtgtgtatacatatacgtgtatgtatacatatatgtgtgc 597
Query: 398 gtgtgtgagtgtgtacgtgtgttcgtgctggatcccctgcaagagcagtaagtactggtg 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gtgtgtgagtgtgtacgtgtgttcgtgctggatcccctgcaagagcagtaagtactggtg 657
Query: 458 agccatctcccctagccttgttgtttgtacttttaatggcagctattctgactggggtga 517
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agccatctcccccagcctcgttgtttgtacttttaatggcagctattctgactggggtgc 717
Query: 518 aaaggactctccttcgatttctctgataactagagattggtaatagatggttgtgagctg 577
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 718 aaaggactctccttcgatttctctgataactatagattggtaatagatggttgtgagctg 777
Query: 578 ccatgcaaatgctgggaactgaacccaggtcctttgtaagagcaggcaattctcttaaag 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 778 ccatgcaaatgctgggaactgaacccaggtcctttgtaagagcaggcaattctcttgaag 837
Query: 638 ccatctctcca 648
|||||||||||
Sbjct: 838 ccatctctcca 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_k12.g1 MSMg01no482_k12.g1 CHROMAT_FILE:
MSMg01no482_k12.g1 PHD_FILE: MSMg01no482_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:37 2005
(614 letters)
>mm_chr1_182177827_182178840
Length = 1014
Score = 1006 bits (520), Expect = 0.0
Identities = 593/630 (94%), Gaps = 27/630 (4%)
Strand = Plus / Plus
Query: 1 tcttctcacagatatctagatcagggatatgcctcggtggcagagcctgccgtgcctgag 60
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 196 tcttctcacagatatctagatcagggatgtgcctcggtggcagagcctgccatgcctgag 255
Query: 61 gc-ttcgggtttcatccac--------atcaaggttatccttaagcctgcgtattctgtt 111
|| || ||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct: 256 gcctt-gggtttcatccacggccccacatcaaagttatccttaagcctgggtattctgtt 314
Query: 112 gctggtctcttcaatgctgggctagagtagactattatct-----gttgtggtaagtact 166
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 315 gctggtctcttcaatgctgggctagagtagactattatcttatctgttgtggtaagtac- 373
Query: 167 cggacaacacagttcaagagtttattctggctctcgcctcattgtacaggcacatcacag 226
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 374 --------acagttcaagagtttattctggctctcgcctcattgtacaggcacatcacgg 425
Query: 227 tgggaggagcttgaagcagctgtcagtcacatctcattgacagacagtcagggagcagag 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 426 tgggaggagcttgaagcagctgtcagtcacatctcattgacagacagtcagggagcaggg 485
Query: 287 accgaggaatggatgtagctgttccggttgttcac-acacacacacacacacacacacac 345
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 486 accgaggaatggatgtagctgttccggttgttc-ctacacacacacacacacacacacac 544
Query: 346 acacacacacacacacacacacacagagtctggactgtgccacc-accatgagcttgtct 404
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 545 acacacacacacacacacacacacagagtccggactgtgccacccaccatgagcttgtct 604
Query: 405 tcacaccccagctaacaaaatcaagataattctcaaaggctcatctcctaggcgactgta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tcacaccccagctaacaaaatcaagataattctcaaaggctcatctcctaggcgactgta 664
Query: 465 gattctgtcaagttcacagttaactatcatagctgtgcattgaaaacgtggatctgtaag 524
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 665 gattctgtcaagttcacagttaactatcatagctgtgcattgaaaacgtggacctgtaag 724
Query: 525 ctccactctagcctaatgtctgggtgacgcattttgagacggtgccctacgttcatatac 584
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 725 ctccactctagcctaatgtctgggcgacgcattttgagatggtgccctacgttcatatac 784
Query: 585 ccatggcctccctgggttgggtcagactca 614
||||||||||||||||||||||||||||||
Sbjct: 785 ccatggcctccctgggttgggtcagactca 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
