Query= MSMg01no482_k18.b1 MSMg01no482_k18.b1 CHROMAT_FILE:
MSMg01no482_k18.b1 PHD_FILE: MSMg01no482_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:38 2005
(688 letters)
>mm_chr1_21447822_21448910
Length = 1089
Score = 1303 bits (674), Expect = 0.0
Identities = 683/686 (99%), Gaps = 1/686 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacttttaaa-ttgttgggtggttgtagctttcccctccattgttaagttcctc 62
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttaaaaattgttgggtggttgtagctttcccctccattgttaagttcctc 263
Query: 63 ttgtttgtttgtttgggagatctttctttggaactcctaagcatcgctacaggtaaacag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgtttgtttgtttgggagatctttctttggaactcctaagcatcgctacaggtaaacag 323
Query: 123 ggatgatagttacatatgtacctacattcagcatgcattgtataccccaggcaagattat 182
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggatgatggttacatatgtacctacattcagcatgcattgtataccccaggcaagattat 383
Query: 183 gatatccataaattcatgcaatctcaaagcaatcgacagcactgcacacatatattaaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatatccataaattcatgcaatctcaaagcaatcgacagcactgcacacatatattaaac 443
Query: 243 acatgacacttgacattatgttcttcattcttgggaaaagaaaccaaacatggggtttgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatgacacttgacattatgttcttcattcttgggaaaagaaaccaaacatggggtttgg 503
Query: 303 ttggggggcagcctcgacatgtaatgaatgaggtgattgacagaaagagatgcaatgttg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggggggcagcctcgacatgtaatgaatgaggtgattgacagaaagagatgcaatgttg 563
Query: 363 acagttttctgccatgaaagcaagctaccaggaagatcacttttatctaaacattccgtt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acagttttctgccatgaaagcaagctaccaggaagatcacttttatctaaacattccgtt 623
Query: 423 ctgtggtactggatgggatcaagctgccgtgggatggtcaaggatgtactagcaacagaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtggtactggatgggatcaagctgccgtgggatggtcaaggatgtactagcaacagaa 683
Query: 483 tccaaaatgaatctttacccttccatggttaagatgtgtgtcttttgtgttgtgttagga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccaaaatgaatctttacccttccatggttaagatgtgtgtcttttgtgttgtgttagga 743
Query: 543 ggagcaggtaggaattatggagacaggtctctgactcatgagaaaacaggagtaatatag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggagcaggtaggaattatggagacaggtctctgactcatgagaaaacaggagtaatatag 803
Query: 603 ctatcttttaaaatacatacatatatacttataggaatcaaatgaactgtggagagtgtt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctatcttttaaaatacatacatatatacttataggaatcaaatgaactgtggagagtgtt 863
Query: 663 atatgccccaacatggttttgtttca 688
||||||||||||||||||||||||||
Sbjct: 864 atatgccccaacatggttttgtttca 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1089
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1079
Effective search space: 731562
Effective search space used: 731562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_k18.g1 MSMg01no482_k18.g1 CHROMAT_FILE:
MSMg01no482_k18.g1 PHD_FILE: MSMg01no482_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:38 2005
(667 letters)
>mm_chr1_21495342_21496409
Length = 1068
Score = 1230 bits (636), Expect = 0.0
Identities = 660/668 (98%), Gaps = 1/668 (0%)
Strand = Plus / Minus
Query: 1 tctggaggttgctgtcaatctgttgaagcttatgtgattcaaacttgtacaggtaaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tctggaggttgctgtcaatctgttgaagcttatgtgattcaaacttgtacaggtaaaagt 809
Query: 61 gcagagtgttcaaggaaccagaactaaagagacaggaaagtcgtgttctgggccttttag 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 808 gcagagtgttcaaggaaccagagctaaagagacaggaaagtcgtgttctgggccttttag 749
Query: 121 ctctgcagtcctgctacgttcttgtaggggaaactgagcacagagttctgtctactcaaa 180
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 748 ctctgcagtcctgctacgttctggtaggggaaactgagcacagagttctgtttactcaaa 689
Query: 181 acgatgcacatgaacgcttcagaaatagttttgagaaataaaatatattagttgtgtgac 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acgacgcacatgaacgcttcagaaatagttttgagaaataaaatatattagttgtgtgac 629
Query: 241 ttatggctgtctcaacctgtttcttgcagataccattgttctcatcgcttcaatagcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttatggctgtctcaacctgtttcttgcagataccattgttctcatcgcttcaatagcagt 569
Query: 301 tgtctctgcaaaaactcagggtaatattttcgccacgtcagcgctcagaagtctccggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgtctctgcaaaaactcagggtaatattttcgccacgtcagcgctcagaagtctccggtt 509
Query: 361 cctacagatcctgcgtatggtgcgcatggacagaaggggagggacctggaagctgctcgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cctacagatcctgcgtatggtgcgcatggacagaaggggagggacctggaagctgctcgg 449
Query: 421 ctctgtggtttatgctcacagcaaggtaaaagtgcgctctctgcaccgtataagaaaaat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 448 ctctgtggtttatgctcacagcaaggtaaaagtgcgctctctgcaccgtataggaaaatt 389
Query: 481 tttgaaatgttctgttgattgcaatgtttaataaacttgacacaggcagttgctccagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttgaaatgttctgttgattgcaatgtttaataaacttgacacaggcagttgctccagat 329
Query: 541 tgtgattcaagctatttgaagccctgatgcgtaatgcattactttaaagcctttgttata 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtgtttcaagctatttgaagccctgatgcgtaatgcattactttaaagcctttgttata 269
Query: 601 tttcctagaaataggagcatgattgaaccatatgtagagttcatgtttccatttcc-aaa 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 268 tttcctagaaataggagcatgattgaaccatatgtagagttcatgtttccatttccaaaa 209
Query: 660 aaatattg 667
||||||||
Sbjct: 208 aaatattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1068
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1058
Effective search space: 695106
Effective search space used: 695106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
