Query= MSMg01no483_a07.b1 MSMg01no483_a07.b1 CHROMAT_FILE:
MSMg01no483_a07.b1 PHD_FILE: MSMg01no483_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:04 2005
(652 letters)
>mm_chr1_196365271_196366322
Length = 1052
Score = 1168 bits (604), Expect = 0.0
Identities = 634/650 (97%), Gaps = 12/650 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaagtttc--ctgccgtataaagtcaggcacagtggtggctgcctgtagtccca 62
|||||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcaaag--tccactgctgtataaagtcaggcacagtggtggctgcctgtagtccca 270
Query: 63 gtactacaaaaggtcaaagaagcgaaatcgtacatttaagaacatcctttactaaacaat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtactacaaaaggtcaaagaagcgaaatcgtacatttaagaacatcctttactaaacaat 330
Query: 123 aaatttaagacaagcctgggatacatgaaacccagtctcaaaaacagacaaaacagttat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaatttaagacaagcctgggatacatgaaacccagtctcaaaaacagacaaaacagttat 390
Query: 183 tcattacctgtcttcaacactagttagtagatggtaaaccccataaaaatattttcctgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcattacctgtcttcaacactagttagtagatggtaaaccccataaaaatattttcctgg 450
Query: 243 gacagcaagattccctaatgggtaaaagtgctttccagccagcctgagagcctgaatttg 302
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 gacagcaagattccctaatgggtaaaagtgctttccagccagcctgacagcctgaatttg 510
Query: 303 atggcatactcatggtgggaggaaggagaactgaatctcaaatgttattctctgatttcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atggcatactcatggtgggaggaaggagaactgaatctcaaatgttattctctgatttcc 570
Query: 363 acattaacagtgtggcaggcaaacacacatgcacacatacatacacacacacacacacac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acattaacagtgtggcaggcaaacacacatgcacacatacatacacacacacacacacac 630
Query: 423 acacacacacacacatacacacacacacacacacattcatatgcatgcacacatgtatgc 482
||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 631 acacatacacacaca--------cacacacacacattcatatgcatgcacacatgtatgc 682
Query: 483 acacacatgcatgcagggcccgggaagtctataagcaaataaatgggattttacattgtt 542
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acacacatgcatgcagggaccgggaagtctataagcaaataaatgggattttacattgtt 742
Query: 543 aatacttttgtttcagattgatttgtgtctcaccagcctacagacatatagtaaactacc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aatacttttgtttcagattgatttgtgtctcaccagcctacagacatatagtaaactacc 802
Query: 603 aaaaacttcttggctgctacaatccatggttgcctgctctaactttccat 652
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaaaacttcttggctgctacaatccatggttgcctgctctaactttccat 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_a07.g1 MSMg01no483_a07.g1 CHROMAT_FILE:
MSMg01no483_a07.g1 PHD_FILE: MSMg01no483_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:04 2005
(608 letters)
>mm_chr1_196542448_196543455
Length = 1008
Score = 909 bits (470), Expect = 0.0
Identities = 518/552 (93%), Gaps = 32/552 (5%)
Strand = Plus / Minus
Query: 89 gacccaacacttcttactagtactattccttaattacatttagttaattgacagagagag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 gacccaacacttcttactagtactattccttaattacatttagttaattgacagagagag 949
Query: 149 ac--------agagagacagagagaggcagagagaaaagtgag--acacacacacacaca 198
|| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 948 acagagagatagagagacagagagaggcagagagaaaagtgagacacacacacacacaca 889
Query: 199 cat------acacacacacacacacacatacagagagagagagagagagagagagagaga 252
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 888 catacacacacacacacacacacacacatagagagagagagagagagagagagagagaga 829
Query: 253 gag---------------g-ggatctgagtgctagattggatggttctagctttgtacag 296
||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gagagagagagagagagagaggatctgagtgctagattggatggttctagctttgtacag 769
Query: 297 cgatggaaacctgcctaggcagaattgaaaacctgattctattctcacatggtcccaaag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cgatggaaacctgcctaggcagaattgaaaacctgattctattctcacatggtcccaaag 709
Query: 357 atagaagaggtaccatatctttgggaaaaggtgggagaacacaagtgtagagggaagaca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 atagaagaggtaccatatctttgggaaaaggtgggagaacacaagtgtagagggaagaca 649
Query: 417 taaaataacactggctatagtgtgttataaagtgaaattacagaaaggattcttcatgtc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 648 taaaataacactggctatagtgtgttataaagtgaaattacagaaaggattcttcttgtc 589
Query: 477 atatcatatgaagttttgacatgacttgagtgtgccttacaagcctcataagctacaaag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atatcatatgaagttttgacatgacttgagtgtgccttacaagcctcataagctacaaag 529
Query: 537 tactgtagagcctttggggttgggggagatactggtatgtaattagattactgaaggtgt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tactgtagagcctttggggttgggggagatactggtatgtaattagattactgaaggtgt 469
Query: 597 tattcttgggag 608
||||||||||||
Sbjct: 468 tattcttgggag 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
