Query= MSMg01no483_f17.b1 MSMg01no483_f17.b1 CHROMAT_FILE:
MSMg01no483_f17.b1 PHD_FILE: MSMg01no483_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:32 2005
(553 letters)
>mm_chr1_196473418_196474372
Length = 955
Score = 1013 bits (524), Expect = 0.0
Identities = 544/552 (98%), Gaps = 4/552 (0%)
Strand = Plus / Plus
Query: 5 gaattcatagtcattcttactctaaatcttggtgttctttcctgtgagtgcttatgcttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagtcattcttactctaaatcttggtgttctttcctgtgagtgcttatgcttg 264
Query: 65 tgtttagaaccagcattcttgccagtagtaggagtagcagctgtccacaagtaccaagat 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttagaaccagtattcttgccagtagtaggagtagcagctgtccacaagtaccaagat 324
Query: 125 cacagagacctgacctggttcctctcagaactgaggagggaacacaagactgagaaaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacagagacctgacctggttcctctcagaactgaggagggaacacaagactgagaaaaaa 384
Query: 185 aaaatgtatgctagtttattaaccaatttttccgaggaaatgaagcatcagatttctcct 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaa-tgtatgctagtttattaaccaatttttccgaggaaatgaagcatcagatttctcct 443
Query: 245 ccccgaagaagatattt---aaaaaaaaaatcaaggttgaaggaagcttctattctgctc 301
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccccgaagaagatattttaaaaaaaaaaaatcaaggttgaaggaagcttctattctgctc 503
Query: 302 acagctatatcttttgtttcctggaagctttttccagaccaggatgcaacagctcccata 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagctatatcttttgtttcctggaagctttttccagaccaggatgcaacagctcccata 563
Query: 362 gcactcagggtcttttctggtccagaatctgtggccttaactgcaagagttcatcctgga 421
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 564 gcactcagggtcttttctggtccagaatctgtggccttaactgcaagatttcatgctgga 623
Query: 422 cagttagctggcatgtcttggagcatcaaagcacagtctcatgctaggctctatgcaacc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagttagctggcatgtcttggagcatcaaagcacagtctcatgctaggctctatgcaacc 683
Query: 482 cttatccttaagagtcatgcagttccctcccacctattttcttcccactcagagagaggg 541
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 684 cttatccttaagagtcatgcagttccctcccacctattttcttcccgctcagagagaggg 743
Query: 542 aatgagggaata 553
||||||||||||
Sbjct: 744 aatgagggaata 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space: 513135
Effective search space used: 513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_f17.g1 MSMg01no483_f17.g1 CHROMAT_FILE:
MSMg01no483_f17.g1 PHD_FILE: MSMg01no483_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:32 2005
(539 letters)
>mm_chr1_196515555_196516497
Length = 943
Score = 1013 bits (524), Expect = 0.0
Identities = 538/544 (98%), Gaps = 6/544 (1%)
Strand = Plus / Minus
Query: 1 caggctgatcacttcctccccaatatctgaactgtactagccactaatcacagaaatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caggctgatcacttcctccccaatatctgaactgtactagccactaatcacagaaatcag 684
Query: 61 gacctgtgcaaactttttcagctctgtgtggggcacgtatgacttcccatcagatattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gacctgtgcaaactttttcagctctgtgtggggcacgtatgacttcccatcagatattct 624
Query: 121 ctgactcctctcattcacagcccttcatttcctcaaatgcagatggctttgttttccaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgactcctctcattcacagcccttcatttcctcaaatgcagatggctttgttttccaaa 564
Query: 181 tttgatagatgctgacaggtatattgttcccagcatctcccagactgccagaggctgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttgatagatgctgacaggtatattgttcccagcatctcccagactgccagaggctgctt 504
Query: 241 aagtcaaatggttttctttcccctaataacttggagggatggttttttt--tctctctct 298
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 503 aagtcaaatggttttctttcccctaataacttggagggatggttttttttctctctctct 444
Query: 299 ctt-aaaaaaaagaagccttt--aaaaaaatgcctcttttttaccttaaagagacagagt 355
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 443 cttaaaaaaaaagaagcctttaaaaaaaaatgcctcttttttaccttaaagagacagagt 384
Query: 356 gtcatttatcttcctctttgctcaaagtcaaatgaacattaaacaaagcccaacctgcct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtcatttatcttcctctttgctcaaagtcaaatgaacattaaacaaagcccaacctgcct 324
Query: 416 tgaagcaatcatttgtgactgcaggatgggagtagggggtgggatagaccttggagacta 475
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 323 tgaagcaatcatttgtgactgcaggatgggagta-ggggtgggatagaccttggagacta 265
Query: 476 catcctgggactggtgactgacaggccataggaaagcaggcatgtatggatatgcatggc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catcctgggactggtgactgacaggccataggaaagcaggcatgtatggatatgcatggc 205
Query: 536 agtc 539
||||
Sbjct: 204 agtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 943
Length adjustment: 10
Effective length of query: 529
Effective length of database: 933
Effective search space: 493557
Effective search space used: 493557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
