Query= MSMg01no483_g11.b1 MSMg01no483_g11.b1 CHROMAT_FILE:
MSMg01no483_g11.b1 PHD_FILE: MSMg01no483_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:35 2005
(239 letters)
>mm_chr1_74548996_74549635
Length = 640
Score = 389 bits (201), Expect = e-113
Identities = 220/235 (93%), Gaps = 15/235 (6%)
Strand = Plus / Plus
Query: 1 agtatctgaagactgatgctttcaaaacacatgatggttcttacagcatcttacacttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatctgaagactgatgctttcaaaacacatgatggttcttacagcatcttacacttta 260
Query: 61 aatcattacaagcttatgcaatttccaatttgattcatttaaccaattcttgagaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcattacaagcttatgcaatttccaatttgattcatttaaccaattcttgagaaaaaa 320
Query: 121 tgtgaaaatgagtccctttatgtttacttttttt-acctagtatatacgtgtgtgtgtgt 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tgtgaaaatgagtccctttatgtttacttttttttacctagtatatacgtgtgtgtgtgt 380
Query: 180 gtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagag 234
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgtg--------------agagagagagagagagagagagagagagagag 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space: 145130
Effective search space used: 145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no483_g11.g1 MSMg01no483_g11.g1 CHROMAT_FILE:
MSMg01no483_g11.g1 PHD_FILE: MSMg01no483_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:36 2005
(495 letters)
>mm_chr1_74670063_74670957
Length = 895
Score = 845 bits (437), Expect = 0.0
Identities = 484/509 (95%), Gaps = 16/509 (3%)
Strand = Plus / Minus
Query: 1 aatgttcattgtatggatgtagtcataagacaggggctgggagaaatgcagaaaaaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aatgttcattgtatggatgtagtcataagacaggggctgggagaaatgcagaaaaaaata 483
Query: 61 gaaaagacagaaatctggaggtgagaggaaattaccataaggctatcccttcgaaatgtc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaaaagacagaaatctggaggcgagaggaaattaccataaggctatcccttcgaaatgtc 423
Query: 121 tgctcggaatcatctgattgggccagcagcttccccaacaggtccaaaaagaggctggca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgctcggaatcatctgattgggccagcagcttccccaacaggtccaaaaagaggctggcg 363
Query: 181 gcctcctgaaacacctgtaggctggggaagaatgaacccatagcatcttcccatcctccc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 362 gcctcctgaaacacctgtaggctggggaagaatgaacccatggcatcttcccatcctccc 303
Query: 241 acgaaaagcttggggataactatggcgaatgggtcagttctggaaaggcaggagacctct 300
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 302 acgaaaagcttggggatgactatggcgaatgggtcaattctggaaaggcaggagacctct 243
Query: 301 gccatggaacacattagaatgtttctcctttcaactctgcta--------------acac 346
|||||||||||||| ||||||||||||||| ||||||||||| ||||
Sbjct: 242 gccatggaacacatcagaatgtttctccttccaactctgctaacacacacacacacacac 183
Query: 347 acacacacacacacacacacacacacaccattcaagcccccctctcagctgtgttcatat 406
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 182 acacacacacacacacacacacacacaccattcaag--cccctctcagctgtgttcatat 125
Query: 407 cttgatccttccactgaggcccatctgtgctgggttactgctgactcagagtttgatgtc 466
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 124 cttgatccttccactgaggcccatctgcgctgggttactgctgactcagagtctgatgtc 65
Query: 467 ttgggtaaaagctttaagtgtctcaaggt 495
|||||||||||||||||||||||||||||
Sbjct: 64 ttgggtaaaagctttaagtgtctcaaggt 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
