Query= MSMg01no483_i05.b1 MSMg01no483_i05.b1 CHROMAT_FILE:
MSMg01no483_i05.b1 PHD_FILE: MSMg01no483_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:44 2005
(653 letters)
>mm_chr1_134342012_134343065
Length = 1054
Score = 1156 bits (598), Expect = 0.0
Identities = 646/680 (95%), Gaps = 31/680 (4%)
Strand = Plus / Plus
Query: 1 aatttttctaaataatattctgattttgaatttttgcttttttcctataataaaattgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aatttttctaaataatattctgattttgaatttttgcttttttcctataataaaattgac 238
Query: 61 tgatttatatctttttataatatatctaggggctggagtgtagttcagttggtctagtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgatttatatctttttataatatatctaggggctggagtgtagttcagttggtctagtgc 298
Query: 121 ttgcttatcacataggaagccctgggttcactcttacgcactgtagaaggaaagcttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttgcttatcacataggaagccctgggttcactcttacgcactgtagaaggaaagcttggc 358
Query: 181 aatccatgcctgtactgtagcactcgggaggtggaagtgggaggatcaggagctcaaggg 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aatccatgcctgtattgtagcactcgggaggtggaagtgggaggatcaggagctcaaggg 418
Query: 241 catccttgacttttaa----gcaagtttgaggccaagctgggatacatgagaccctgtct 296
|||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 catccttgac----aacaaagcaagtttgaggccaagctgggatacatgagaccctgtct 474
Query: 297 caaaagctggggggaggtatatacttagaggagctgtggtttcaaaacaaa--------- 347
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 475 caaaagctggggggatgtatatacttagaggagctgtggtttcaaaacaaaacaaaaaac 534
Query: 348 -------------caaaaaacactatgcataatatctggcttatgatccagagagatttc 394
|||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 535 aaaacaaaacaaacaaaaaacactatgcataatatctagcttatgatccagagagatttc 594
Query: 395 tcagtggatgaaagcaagcctaaattcagttctggagcccatgtgacaaaccaaatgcgc 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcagtggatgaaagcaagcctaaattcagttctggagcccatgtgacaaaccaaatgcgc 654
Query: 455 tagcaagcatttgtaaccccagcgttcccatagtgagatgggaggcagagacggaattga 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tagcaagcatttgtaaccccagcgttcccatagtgagatgggaggcagagacggaattga 714
Query: 515 gcagatcatttagtccggagtagcagcacaggatcagaaactagaggtctt-cctcaaga 573
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 715 gcagatcatttagtccggagtagcagcacaggatcagaaactagaggtcttgcctcaaga 774
Query: 574 taatgaggaaggaaccaacccctgcagagccctctgaccccatcatgcaaacatcctggt 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 taatgaggaaggaaccaacccctgcagagccctctgaccccatcatgcaaacatcctggt 834
Query: 634 atatattctcattctctctg 653
||||||||||||||||||||
Sbjct: 835 atatattctcattctctctg 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_i05.g1 MSMg01no483_i05.g1 CHROMAT_FILE:
MSMg01no483_i05.g1 PHD_FILE: MSMg01no483_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:45 2005
(239 letters)
>mm_chr1_134493920_134494558
Length = 639
Score = 439 bits (227), Expect = e-128
Identities = 236/239 (98%)
Strand = Plus / Minus
Query: 1 caccaccccagaaggaggtaggtctgacccgcagttcttcaatgtgggtttagacaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caccaccccagaaggaggtaggtctgacccgcagttcttcaatgtgggtttagacaaggg 380
Query: 61 tagtgccaccagtgagcctggggcagctccagcatggacagccagggtgacctcggcaag 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 379 tagtgccaccagtgagcctggggcagctccagcatggacagctagggtgacctcggcaag 320
Query: 121 tggatgaccgtcaccaaagtgacccaccctcctggaaacttgcttatcaagagatctgtg 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cgaatgaccgtcaccaaagtgacccaccctcctggaaacttgcttatcaagagatctgtg 260
Query: 181 cagtgagcgcatggcattccagacccaggccatgagactgaagccagcacctcctctga 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagtgagcgcatggcattccagacccaggccatgagactgaagccagcacctcctctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
