NNNNNTTGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGACACGG
AGGGCGCGGAATTCAGAGGTTTCTCAAGAAAGATGGCTGAAGACTGGGAA
CATTATGAAGAAGGAAATTACAGCCCTGAACCTATGCAGCATGAGAAAGA
TGGGAGCCTTTTACCATTACGGTGTGCTTCCCAGAATTCACATTTTGGAA
GCAACCCCAAAGCGACTGTTTCGAGAGGTGAGACCTTGGGAGGAAACTGC
TTCATGGGGCTTCTGCCCTCACAAACAGATTAGTGCTCTTCTTGTGGAGT
GCTTTGCTCATAAAACGATGAGTTGTGTGTTTTCTCTCTTGCCCCTGCTC
ACAGTCTCTCATCTTCTGACACCCGTCTGCCCTTTGTGTCATGATGCAGT
GAGGTTCCAATCAGAGGTAGTTTCCAACGTTCAATTTGCCATTATTCAGA
ACCACGAGCCAACGAAACTTAACAATCAATGAATCTGTGGTACTCTGTTG
TAGCAAGACCAAAGAGACTAAGAGAGAAATGGTCCAGTGAGTGACAAGTT
TGAGGCTGAAGACTAGTGGGGAGGCACAAGGGGAAAAATAACCTTTTGTA
GGCAAGTAGACACAGCCACCTCCTCATCCTCAGGACGGGACACGATGGAG
AGGTGTGAGTGCTCCAACTTAGCTGTTTGGTGTGGAGAGGCTCTGTGAAG
GTTGGGCAACATTCAATGAGCTGGCATGTCCACTGCATCCAAGG

NNNNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAATCTGCCCCATCTGAGGCTTT
GCAGGAGAGAGCTACTCAGGGGAAGAAGACTCAAGACCATCCCTGGATTT
CCCAAGCCCTGAAGGATCCTTTCTCAAAGCCTTGCCTACCAGAGGGTGGG
ACTCTGTCCAACAGAACAGCTGTCTTAACTTTTCTTTTTAAAAAATCAAT
TAAGGTTTGTGTTTTCTCAGACATGAAAATGCAGGACAATTAAAAGCGGG
GTTCAGAACCTGTTTTCATTGATCCTCTTGGTCATCAGGAATCAATTTAA
TCCCTTCATACGTTATTGATGGCAGCTGCCTTCTGGAGACAAAACTGAAG
AAAAATCCTAAAATACTAAACGCGAACAGCCCCCCTCCCCCTTTTGTAGC
TCAGGAGCCAGTGTCTGTCAAAGAGCACGTGACACATCAGTGCACAGACT
CAAGATGTGCTAGTACTGGCTTATAGGATTTGATGCCGTCGTCTCTCTCT
TTACTGCAGCTATGGGGCTGGTTTCTCTCCTTCCCCTCCATTTCCTATGA
AGAGTGCAATGATGGGTGGAACTGGTTGGGAACTCCATCTTTATCTTTAA
TAGTTTAGACAGTTCATCCAATAAAGATTGCTAAGATTTCAGCTGTCTTA
AGCACACCTTCAGAAACATCCCGTGAATCTTGTGTAATGTTTCGAGCC

Query= MSMg01no483_k05.g1 MSMg01no483_k05.g1 CHROMAT_FILE:
MSMg01no483_k05.g1 PHD_FILE: MSMg01no483_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:54 2005
         (579 letters)



>mm_chr1_38398911_38399890
          Length = 980

 Score =  762 bits (394), Expect = 0.0
 Identities = 504/580 (86%), Gaps = 65/580 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccccatctgaggctttgcaggagagagctactcaggggaagaagactcaagaccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgccccatctgaggctttgcaggagagagctactcaggggaagaagactcaagaccatc 493

                                                                       
Query: 61  cctggatttcccaagccctgaaggatcctttctcaaagccttgcctaccagagggtggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 492 cctggatttcccaagccctgaaggatcctttctcaaagccttgcctaccagagggtgggg 433

                                                                       
Query: 121 ctctgtccaacagaacagctgtcttaacttttctttttaaaaaatcaattaaggtttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctctgtccaacagaacagctgtcttaacttttctttttaaaaaatcaattaaggtttgtg 373

                                                                       
Query: 181 ttttctcagacatgaaaatgcaggacaattaaaagcggggttcagaacctgttttcattg 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 372 ttttctcagacatgaaaatgcaggacaattaaaagcgggattcagaacctgttttcattg 313

                                                                       
Query: 241 atcctcttggtcatcaggaatcaatttaatcccttcatacgttattgatggcagctgcct 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atcctcttggtcatcagaaatcaatttaatcccttcatacgttattgatggcagctgcct 253

                                                                       
Query: 301 tct-ggagacaaaactgaagaaaaatcctaaaatactaaacgcgaacagcccccctcccc 359
           ||| |||||||||||||||||||||| ||||||||||||| | |||||||          
Sbjct: 252 tctaggagacaaaactgaagaaaaattctaaaatactaaatgtgaacagc---------- 203

                                                                       
Query: 360 cttttgtagctcaggagccagtgtctgtcaaagagcacgtgacacatcagtgcacagact 419
                            |||   |||                        |       ||
Sbjct: 202 -----------------cca---tct------------------------t-------ct 194

                                                                       
Query: 420 caagatgtgctagtactggcttataggatttgatgccgtcgtctctctctttactgcagc 479
              ||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 193 ---gatgtgctaatactggcttataggatttgatgccatcgtctctctctttactacagc 137

                                                                       
Query: 480 tatggggctggtttctctccttcccctccatttcctatgaagagtgcaatgatgggtgga 539
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 136 tatggggctggtttctctccttctcctccatttcctatgaagagtgcaatgatggatgga 77

                                                   
Query: 540 actggttgggaactccatctttatctttaatagtttagac 579
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  actggttgggaactccatctttatctttaatagtttagac 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space:   551930
Effective search space used:   551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)