NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTCTCCATTTCTCAGTGTTAGGTTCTTATTATCCTTAACTAT
CAGCTTACCCTTGTCTTAATGATTGTAATAGCTTGCTAAGCAATTTCTGT
GTGGGTCTCTGTCTCTGTCTGTGTCTGTCTGTCTCTCTGTCTCTCTCTAA
ACACTTTGTTAGCAATGTATAAATAAAAGAAGAAAAATGAATGAAAAGAA
AAGAAGAGTGAATTAAATAATATATAAGAATGCAAGTTAATACAAGCCAT
CATTGACAAAAGGGAGAATGCAAAGAGAGAATAGGACTAAATAAGAAGAG
GTGAGAAGATAAGGTGTCGGGGGTGAGATCTAAGGTATGCTAAGAGACAC
GTAGGAAATGGCCAGCAACAGAAATCAGTGTCACTTGGGCTAAATCTACT
AAAAGCCCAACAAAACCAAAATGAGTGGCAAAATTTCACAATTTTGAATC
TACAAAAGACAGAACCTGCCTTCTGTTGAAGTTGAGTTGTCTACCTAGGC
AGCTAATTTTACAAATATCGTGCTGTATTTCCCTTAACAACCAAGGGTTT
CAATATAGCCACAGTGTTTTCTTCCAAGTTAGACTCATCCCTCTGTATCA
ATGCTTCTGGGATCAAGGTTAACAAAATTTATAGTCATCCCTCCATTGTA
CATCCACCAAAAAAAAAAAAAAAAACAAACCTGAAATGTCAGCAAAAAAG
GACCCAAACAAAGCAATTTTGAAAAAAAATACTCATCACAAA

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGCTAATACCATCTGGTTTTGTTT
TTGGTTTTTTTGTTTGTTTTGTTTTGTTTTGCAGGGTTCATTTAATAGCT
GCTTTTATTTTTGTGGGGGCTGTTTAAATTCTATCTAATCTTGATTTAAG
TTTGGTAAGTAGTACCTATCAGGGTAATTATCCATTCTTTTAGATTTTCC
AACTTGGGAGAGTACAGATTTTTAAAGTATGTCATTATGATTCTTTGGAG
TTCTTGTCTATTGTTATATCCCTGTTTTGTTGCTAATTTTGTTAATTTGA
ATGATCTCTTTCCTTTTAGTTAAATTGGATAAGTTTTGTCACTCTTACTA
ATTTTTTAAAGAAACAACTCTTTGTTTTATTGATTGTTAATATTGGCTTG
TTTGTTTGTTTGTTTCTATTTGTTTTTTTATTGGTTTCTGACCAGAGTTT
ATTTATTTCTTGTCATGTACTTCTTTTGGATGTGATTTCTTCTATTCTAG
ATTTTTCAGATATGCTGTTAAGTTGCTAGTCTAAAATCTCTCCACTTTTC
TCCAGTTTTTATTGTTTTATATTTTATATTTTTAAATATAGGTTCTTAAT
GCTGTGGACTTGTTTCTTAGAACTGCCGCCACTGTCTCCCTTAACTCTAG
GTATTTTGTGTATTCATTTTCATTCAATTTTGGAAAGTACTTAGTTCTTC
CCTTAATTTTTTGTTG

Query= MSMg01no483_k22.b1 MSMg01no483_k22.b1 CHROMAT_FILE:
MSMg01no483_k22.b1 PHD_FILE: MSMg01no483_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:58 2005
         (616 letters)



>mm_chr1_11237372_11238387
          Length = 1016

 Score = 1083 bits (560), Expect = 0.0
 Identities = 597/612 (97%), Gaps = 5/612 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttctccatttctcagtgttaggttcttattatccttaactatcagcttaccct 64
           ||||||||||||||||||||| ||||||||||||||||||||||     |||||||||||
Sbjct: 958 gaattccttctccatttctcaatgttaggttcttattatcctta-----cagcttaccct 904

                                                                       
Query: 65  tgtcttaatgattgtaatagcttgctaagcaatttctgtgtgggtctctgtctctgtctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 tgtcttaatgattgtaatagcttgctaagcaatttctgtgtgggtctctgtctctgtctg 844

                                                                       
Query: 125 tgtctgtctgtctctctgtctctctctaaacactttgttagcaatgtataaataaaagaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 843 tgtctgtctgtctctctgtctctctctaaacactttgttagcaatgtataaagaaaagaa 784

                                                                       
Query: 185 gaaaaatgaatgaaaagaaaagaagagtgaattaaataatatataagaatgcaagttaat 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 783 gaaaaatgaatgaaaagaaaagaagagtgaattacataatatataagaatgcaagttaat 724

                                                                       
Query: 245 acaagccatcattgacaaaagggagaatgcaaagagagaataggactaaataagaagagg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 723 acaagccatcattgacaaaagggagaatgcaaagagagaataggactaaatacgaagagg 664

                                                                       
Query: 305 tgagaagataaggtgtcgggggtgagatctaaggtatgctaagagacacgtaggaaatgg 364
           |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 663 tgagaagataaggtgttgggggtgagatctaaggtatgctgagagacatgtaggaaatgg 604

                                                                       
Query: 365 ccagcaacagaaatcagtgtcacttgggctaaatctactaaaagcccaacaaaaccaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ccagcaacagaaatcagtgtcacttgggctaaatctactaaaagcccaacaaaaccaaaa 544

                                                                       
Query: 425 tgagtggcaaaatttcacaattttgaatctacaaaagacagaacctgccttctgttgaag 484
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tgagtggcaaaatttcacaaatttgaatctacaaaagacagaacctgccttctgttgaag 484

                                                                       
Query: 485 ttgagttgtctacctaggcagctaattttacaaatatcgtgctgtatttcccttaacaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttgagttgtctacctaggcagctaattttacaaatatcgtgctgtatttcccttaacaac 424

                                                                       
Query: 545 caagggtttcaatatagccacagtgttttcttccaagttagactcatccctctgtatcaa 604
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 423 caagggtttcaatatagccacagtgttttttttcaagttagactcatccctctgtatcaa 364

                       
Query: 605 tgcttctgggat 616
           ||||||||||||
Sbjct: 363 tgcttctgggat 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)