BAC Information

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BAC

Clone NameMSMg01-483K23
Chromosome1 (Build37)
Map Location 196,615,506 - 196,666,042
singlet/doubletdoublet
Overlap genePlxna2
Upstream geneLOC667208, EG623172
Downstream geneCd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483K23.T7 (MSMg01no483_k23.b1)MSMg01-483K23.TJ (MSMg01no483_k23.g1)
ACCAG563555AG563556
length771781
length of high quality
(start - end)
592 (50 - 641)562 (77 - 638)
definitionCHROMAT_FILE: MSMg01no483_k23.b1 PHD_FILE: MSMg01no483_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:58 2005CHROMAT_FILE: MSMg01no483_k23.g1 PHD_FILE: MSMg01no483_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,665,454 - 196,666,042)(196,615,506 - 196,616,067)
sequence
NNNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTAAATTTTCAAAATATTATCAAGGTAATTTTGGCAATGTG
ATGAAGCAGTGGGAGAGGAGATAAGACGAAGGATTCCTGGGACCAGAACA
AACTGGGGAAATCTTATCTATACTTAGCTAACACCACACATCCCTTTGCT
TCCCCCACCCCCCACTTCCAGATGCCCACAGTGTAGCATCACTGCAGGGG
CTGAAGAGACACATTATTTCCTTTGAATATTAAGGTTTGAACTACTTTGA
GCAAGGGATACCTCAACAAAGAAGATTCAGAGAAATAAAGGAGAGAATCA
AGAAGGAAACATCAAATTTGACAAAGAGAGAATGAGAGAGAAAATACAGA
AATTGCAGTCTGTTATTTGTATAATGCCAGTTGGCAGACACTGTCATCTG
GATGGTGCCCTCTGCTGATCACTTTTATAATTTCAACACCACACACTGAG
ATGTCCTCAGTGGATGCACTCATCCAATACCAGTAGTAAAGCAGAGTTTA
GTACTTACACCCTGTGCTAAGTCTTAAGACTGTGACATGTATTAATCCTA
ATAAGAAGCAAAATGATGAAAATGAGTCCCAGGCATCTTACAACAGAAGA
TGTGGCCCAGAATCAAAGTGGGTTTTCTTAGCTCAAAAGGATGGGATAAG
GTATGTCTTCCTACCTTAAGGTCCAGATTAAAGTGGATCTTCCCACTAAA
ATAAACAATGTCTTTCACAGG
AAAGCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATGGATTAAGCCCCAGTCTGCC
CAGTGTTACCTACCTGAAAGCTTTGCACTATAAACTCTACCAGAATAAGC
CTTCTGTTTTTATCACAACAGAGGACAGGAATATGTATTGACAACCTGAC
TGGACCCTAAGCATTGATTAGTCATATTCTAGAAAAAAAGGATTTCTCAA
AAATCTCATAGAGCCTTGTCTCTGCCCATATTCTTTAAACTTTCTACTGT
GCTCCCTTCCTCATCTAGCGAAGGTAAAGTGAAGGTGCTGATGGACACTG
GTAGAAGATATTTCTGTAGCACATAAAAGAAGACAGCAGAATGTATCATG
GGCCATACATAGTGGAAGGGTCATGCCTTTCAAGCTAGTTCATGCCCATA
TCTTTTGTCTTAACCCTTCTCTGTTTCTCCATCAGGAGGTCAATGAATGA
GATTGTATGTGTTTCACCCCCATCATCCAATGGACTAGGACCAGTCCCTG
TCTCCGTGAGTGTCGACAGAGCCCGGGTGGACAGCAGTCTGCAGTTCGAG
TATATAGATGACCCACGGGTCCAACGTATTGAGCCAGAGTGGAGTATCAC
TAGGTGAGTGAGATTGGTTACGTACACCTAAAGGGATTTTAGGTTAGCCC
AGCACATCATCTGGAAGACAGTGTGATTGGTGGACTGTATCTGGNAGGAG
GTGAGGGTTACAGGATTTACCCACAGGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_k23.b1 MSMg01no483_k23.b1 CHROMAT_FILE:
MSMg01no483_k23.b1 PHD_FILE: MSMg01no483_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:58 2005
         (592 letters)



>mm_chr1_196665231_196666222
          Length = 992

 Score = 1102 bits (570), Expect = 0.0
 Identities = 584/592 (98%), Gaps = 7/592 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaaattttcaaa----atattatcaaggtaattttggcaatgtgatgaagcag 60
           |||||||||||||   |||    |||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcttaaatt---aaaagatatattatcaaggtaattttggcaatgtgatgaagcag 756

                                                                       
Query: 61  tgggagaggagataagacgaaggattcctgggaccagaacaaactggggaaatcttatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgggagaggagataagacgaaggattcctgggaccagaacaaactggggaaatcttatct 696

                                                                       
Query: 121 atacttagctaacaccacacatccctttgcttcccccaccccccacttccagatgcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atacttagctaacaccacacatccctttgcttcccccaccccccacttccagatgcccac 636

                                                                       
Query: 181 agtgtagcatcactgcaggggctgaagagacacattatttcctttgaatattaaggtttg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 635 agtgtagcatcactgcaggggctgaagagacacattatttcccttgaatattaaggtttg 576

                                                                       
Query: 241 aactactttgagcaagggatacctcaacaaagaagattcagagaaataaaggagagaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aactactttgagcaagggatacctcaacaaagaagattcagagaaataaaggagagaatc 516

                                                                       
Query: 301 aagaaggaaacatcaaatttgacaaagagagaatgagagagaaaatacagaaattgcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aagaaggaaacatcaaatttgacaaagagagaatgagagagaaaatacagaaattgcagt 456

                                                                       
Query: 361 ctgttatttgtataatgccagttggcagacactgtcatctggatggtgccctctgctgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctgttatttgtataatgccagttggcagacactgtcatctggatggtgccctctgctgat 396

                                                                       
Query: 421 cacttttataatttcaacaccacacactgagatgtcctcagtggatgcactcatccaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cacttttataatttcaacaccacacactgagatgtcctcagtggatgcactcatccaata 336

                                                                       
Query: 481 ccagtagtaaagcagagtttagtacttacaccctgtgctaagtcttaagactgtgacatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ccagtagtaaagcagagtttagtacttacaccctgtgctaagtcttaagactgtgacatg 276

                                                               
Query: 541 tattaatcctaataagaagcaaaatgatgaaaatgagtcccaggcatcttac 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tattaatcctaataagaagcaaaatgatgaaaatgagtcccaggcatcttac 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no483_k23.g1 MSMg01no483_k23.g1 CHROMAT_FILE:
MSMg01no483_k23.g1 PHD_FILE: MSMg01no483_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:59 2005
         (562 letters)



>mm_chr1_196615306_196616267
          Length = 962

 Score = 1056 bits (546), Expect = 0.0
 Identities = 558/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatggattaagccccagtctgcccagtgttacctacctgaaagctttgcactataaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatggattaagccccagtctgcccagtgttacctacctgaaagctttgcactataaact 260

                                                                       
Query: 61  ctaccagaataagccttctgtttttatcacaacagaggacaggaatatgtattgacaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccagaataagccttctgtttttatcacaacagaggacaggaatatgtattgacaacc 320

                                                                       
Query: 121 tgactggaccctaagcattgattagtcatattctagaaaaaaaggatttctcaaaaatct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tgactggaccctaagcattgattagtcatattctagaaaaaaaggatttctcaaaactct 380

                                                                       
Query: 181 catagagccttgtctctgcccatattctttaaactttctactgtgctcccttcctcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 catagagccttgtctctgcccatattctttaaactttctactgtgctcccttcctcatcc 440

                                                                       
Query: 241 agcgaaggtaaagtgaaggtgctgatggacactggtagaagatatttctgtagcacataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 agcgaaggtaaagtgaaggtgctgatggacactggtagaagatatttctgtagcacaaaa 500

                                                                       
Query: 301 aagaagacagcagaatgtatcatgggccatacatagtggaagggtcatgcctttcaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaagacagcagaatgtatcatgggccatacatagtggaagggtcatgcctttcaagct 560

                                                                       
Query: 361 agttcatgcccatatcttttgtcttaacccttctctgtttctccatcaggaggtcaatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttcatgcccatatcttttgtcttaacccttctctgtttctccatcaggaggtcaatga 620

                                                                       
Query: 421 atgagattgtatgtgtttcacccccatcatccaatggactaggaccagtccctgtctccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgagattgtatgtgtttcacccccatcatccaatggactaggaccagtccctgtctccg 680

                                                                       
Query: 481 tgagtgtcgacagagcccgggtggacagcagtctgcagttcgagtatatagatgacccac 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagtgtcgacagagcccgggtggatagcagtctgcagttcgagtatatagatgacccac 740

                                 
Query: 541 gggtccaacgtattgagccaga 562
           ||||||||||||||||||||||
Sbjct: 741 gggtccaacgtattgagccaga 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)