TTGTATGTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTCTCCCAAATTCTATGTAAATCACTACAAAAG
TACCTAAAATATTTATTTGTAAAATTTAAGAAAAAACATATTTTACACAT
ACAGTCTAAGATTATCAAGAGTTCCTGTGTCATAGGCAGTAAAAAGAGAA
ATAGTTATATTTTGATATATTAAATTTTTAAACACTTTTTTTTATCAGAC
CCATAATTGTTCCTGTCTGAAAGAACTGTGGGGCTGGAAAATGGAGAGGA
GTCTGAGGAAAAGAAGGTACAGCAACAGGACCAAAGTGGGTTCCAGCTTA
AGAGGAGGACCCAAGACCTAACACTATTACTGAGGCTATGGAGGGCTTAC
AAAAAGGAACCTATCATGACTGCCCTCTGAAAGACCCAACAAGCAGCTGA
AAAAAGTCAGATGCAAATACTTGCACCCAACCAATGGACAGAAGTTGCAC
TGTGGTTGAATTAGGGGAAAGCTGGAAGAAACTGAGGAGGAAGACAACCC
TATAGGAGGACCAGCAGTCTCAGTTAACCTGGACCTCCAAGATCTCTCAG
ACACTGGACCACCAATCAGGCAGCATAAACCAGCTGATATGAGACCCCCC
CCCAACACACCTACAGCAGAGGACTGCTGGGTTTGACTTGAGTCAGATAG
ATGCATGTAACCCTCTAGAGACTGACAGCN

TTTTTTTTACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGAGATTGTT
TCTCCTAGAAATGCCATGGAGTCTCACCAATGTGACTTCCTAATCATGAG
CTGATTAGGGATCACAATAGACATGGTAGTGTGGACAATGGGGGAGCAGC
AGATTTCAATACTACTCAAAAATTATGGACAACTGCACACTGTTGAAAAG
AAAGAGAAAATTTTCCCAAAGGAAGAGCACACTAAATATCAATTGTTATG
CAATAGAAATGATCAGCTCTGAAAACATATATGTGCAAGTAAAATTATAC
AGACTGAGCAAGCAGTGTTTATATAGGAGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGCCTCCCCCCCCCCCCCCCCTTTTTTTTTTTTTTTTTCCCCT
TTCTTTTCCCCTTTTCTCCCCCCTTTCCCCTCTTTTCCCTTTTCCCCCTT
CTTTTCTTCCTTTTTTTTTCCTTTCCCCCCTCTCCTTCTCTTCTTTTTAT
TTCCCCCCTTTTTTTTTTTCCCCCTTTTCCCCTTTTTCTTCTTCCCTTTC
TCTTCCTTCCTCGTCTCCGCTCTTTTCGTCTTTTTTCCCCCTTTTTTGCG
CCCGTGTTTTTTTCTCCTGGTTCGCCTTTTGTCCCATTCCTTTTTCTCTT
CTCTCGCTCCCCTATTCTCCATCCCCCTCCCACCCTATTAGCCATTCCCC
TTTCCTTCCCATTTCATTTCCTN

Query= MSMg01no483_o03.b1 MSMg01no483_o03.b1 CHROMAT_FILE:
MSMg01no483_o03.b1 PHD_FILE: MSMg01no483_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:15 2005
         (554 letters)



>mm_chr1_148280240_148281194
          Length = 955

 Score =  944 bits (488), Expect = 0.0
 Identities = 537/554 (96%), Gaps = 7/554 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctccc-aaattctatgtaaatcactacaaaagtacctaaaatatttatttg 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctccataaattctatgtaaatcactacaaaagtacctaaaatatttatttg 264

                                                                       
Query: 64  taaaatttaagaaaaaa-catattttacacatacagtctaagattatcaagagttcctgt 122
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 taaaatttaagaaaaaaacatattttacacatacagtctaagattatcaagagttccagt 324

                                                                       
Query: 123 gtcataggcagtaaaaagagaaatagttatattttgatatattaaatttttaaacacttt 182
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcataggcagtaaaa-gagaaatagttatattttgatatattaaatttttaaacacttt 383

                                                                       
Query: 183 ttttt--atcagacccataattgttcctgtctgaaagaactgtggggctggaaaatggag 240
           |||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 tttttttatcagacccataattgttcctgtctgaaagaactgcggggctggaaaatggag 443

                                                                       
Query: 241 aggagtctgaggaaaagaaggtacagcaacaggaccaaagtgggttccagcttaagagga 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggagcctgaggaaaagaaggtacagcaacaggaccaaagtgggttccagcttaagagga 503

                                                                       
Query: 301 ggacccaagacctaacactattactgaggctatggagggcttacaaaaaggaacctatca 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 504 ggacccaagacctaacactattactgaggctatggaggacttacaaaaagggacctatca 563

                                                                       
Query: 361 tgactgccctctgaaagacccaacaagcagctgaaaaaagtcagatgcaaatacttgcac 420
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 tgactgccctctgaaggacccaacaagcagctgaaaaa-gtcagatgcaaatacttgcac 622

                                                                       
Query: 421 ccaaccaatggacagaagttgcactgtggttgaattaggggaaagctggaagaaactgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccaaccaatggacagaagttgcactgtggttgaattaggggaaagctggaagaaactgag 682

                                                                       
Query: 481 gaggaagacaaccctataggaggaccagcagtctcagttaacctggacctccaagatctc 540
           ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 683 gaggaagacaacc-tgtaggaggaccagcagtctcaattaacctggacctccaagatctc 741

                         
Query: 541 tcagacactggacc 554
           |||||||| |||||
Sbjct: 742 tcagacaccggacc 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space:   514080
Effective search space used:   514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)