NNNNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTGTCTGCACATGAGCAAATGTATATAGGTAACAA
ATTCTAAAGACTTGAGCAGTTATGTTTGTTGGAGTTCACTAGCCACTTTT
TCTGGCTCAGTCTTTTATCTTTTTGATAACAACTATCCTAACAGGCATAA
GGGGTTAATTTAACTGGTTTACAGTTGAATTTCCCTTATATTTAGCATCT
TTCCAAGTATACATTAGTTACTGGAATGTCTTCATTTCAGGAATGTCTAT
CTACATTCTTTGCCTAAAAGGGGATATTTTCTTGCTACTGAGTTACTTGA
GTCAGTGAGCATCCATTATATAAGTAAGACTGACTCGGCGAAACTAAAGC
AACAGAAATATTTAAGTTTTAACTCAATATTATTCAATACAATTATTTGT
TCCTCCCCCTTTCCTGCTGATTGTCTGATCCAAGCAATGCAAAAAGAGCT
CATTTCAATGCAACGTTCCTTATACTCTTTGCTTTCATTTTAATGTAGTC
TTCATATGTCATATGGAATATGTTTAAATGTGCTTATGTTCTTATTTGTT
ACTATAAGACAAATGGAATCTTCTTAAAAATACATAGATAGTTGCATAAC
TACTAATAATTTGAGTATATGCTGTGTATATCTATATATATATATATATG
TAAGTAATTGAAAGAAGATATAATACTAGTGACAAACAGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAA

Query= MSMg01no484_b03.b1 MSMg01no484_b03.b1 CHROMAT_FILE:
MSMg01no484_b03.b1 PHD_FILE: MSMg01no484_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:30 2005
         (684 letters)



>mm_chr1_116716117_116717200
          Length = 1084

 Score = 1145 bits (592), Expect = 0.0
 Identities = 614/626 (98%), Gaps = 8/626 (1%)
 Strand = Plus / Minus

                                                                        
Query: 59   ttgagcagttatgtttgttggagttcactagccactttttctggctcagtcttttatctt 118
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1084 ttgagcagttatgtttgttggagttcactagccactttttctggttcagtcttttatctt 1025

                                                                        
Query: 119  tttgataacaactatcctaacaggcataaggggttaatttaactggtttacagttgaatt 178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tttgataacaactatcctaacaggcataaggggttaatttaactggtttacagttgaatt 965

                                                                        
Query: 179  tcccttatatttagcatctttccaagtatacattagttactggaatgtcttcatttcagg 238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  tcccttatatttagcatctttccaagtatacattagttactggaatgtcttcatttcagg 905

                                                                        
Query: 239  aatgtctatctacattctttgcctaaaaggggatattttcttgctactgagttacttgag 298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  aatgtctatctacattctttgcctaaaaggggatattttcttgctactgagttacttgag 845

                                                                        
Query: 299  tcagtgagcatccattatataagtaagactgactcggcgaaactaaagcaacagaaatat 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  tcagtgagcatccattatataagtaagactgactcggcgaaactaaagcaacagaaatat 785

                                                                        
Query: 359  ttaagttttaactcaatattattcaatacaattatttgttcctccccctttcctgctgat 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  ttaagttttaactcaatattattcaatacaattatttgttcctccccctttcctgctgat 725

                                                                        
Query: 419  tgtctgatccaagcaatgcaaaaagagctcatttcaatgcaacgttccttatactctttg 478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  tgtctgatccaagcaatgcaaaaagagctcatttcaatgcaacgttccttatactctttg 665

                                                                        
Query: 479  ctttcattttaatgtagtcttcatatgtcatatggaatatgtttaaatgtgcttatgttc 538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  ctttcattttaatgtagtcttcatatgtcatatggaatatgtttaaatgtgcttatgttc 605

                                                                        
Query: 539  ttatttgttactataagacaaatggaatcttcttaaaaatacatagatagttgcataact 598
            |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  ttatttattactgtaagacaaatggaatcttcttaaaaatacatagatagttgcataact 545

                                                                        
Query: 599  actaataatttgagtatatgctgtgtatatctatatatatatatatatgtaagtaattga 658
            |||||||||||||||||||||||||||||||        ||||||||||||||||||| |
Sbjct: 544  actaataatttgagtatatgctgtgtatatc--------tatatatatgtaagtaattta 493

                                      
Query: 659  aagaagatataatactagtgacaaac 684
            ||||||||||||||||||||||||||
Sbjct: 492  aagaagatataatactagtgacaaac 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)