BAC Information

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BAC

Clone NameMSMg01-484C23
Chromosome1 (Build37)
Map Location 179,635,846 - 179,636,441
singlet/doubletsinglet
Overlap genenone
Upstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770
Downstream gene1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484C23.T7 (MSMg01no484_c23.b1)MSMg01-484C23.TJ (MSMg01no484_c23.g1)
ACCAG563934AG563935
length7841,344
length of high quality
(start - end)		627 (54 - 680)---
definitionCHROMAT_FILE: MSMg01no484_c23.b1 PHD_FILE: MSMg01no484_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:39 2005CHROMAT_FILE: MSMg01no484_c23.g1 PHD_FILE: MSMg01no484_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCTTTTTATTCTCCCCTGGCTTTCACACCTAGCTTGGAATTTGTG
CAACGGCATCAATTGTCTGGTCCAACAGTCACCAAATCCCATCACCTTAA
TTCCCAGTCCAGGCCATGTTTCCCTAGGGCCTAATGCACTTCCTCTCTCT
GCTACTGCATTTCCTCCCACTGAAGCACAGTCTACACTCACTACTGGCTA
AGATTTGCCAACTGTACTGCTCTTTGACCAGGCCTAAGCTGTGTTCATCT
AGAAGCAGGTACAGCATCCTCATTATCAGCCCAAGAGCAGGCTGCCGATC
GCAGAACTTCATCTCAACATTGTTCCCATTCTTGGGCTACTCCTGGTGTC
AACAGTTACAGACAGGTTGTCTGGGAAACAAGAGATGAAGAGTGACAGAA
AGTAAACTAGTTACAGAACTCTTGAGGTCAACACCCGTGGAGAAAGGGCA
GGGTTCCCAATATCAGTTCCCCCTCTCCTCCCAACACCTCCTCTCATAGA
ACATCCCCTCCCAGTTCCTCCCTCCTCTTCTCCTTTGAGAAGGGAGCCCC
CTCTAGATAACACCATGCTATACACACACACACACACACACACACACACA
CACACACACACACACACACACACAGAGGCAAGAACACACATCANGTCACT
GCAGGACTAAACACATCCTCTCCCACTGAGGACAAACAAAGCAATCATTT
TAAGGAACAAGATCCACAAGGCAGCAGGCAGGAN

GCAGCGCTCTTTCATTCGTGCGCTCGTGTGTATATGTATTAGGCGGGTAG
AAGTGTTGGATCTCTACCTTCCTCCACGACGGTGGCGGATCTGTCGCACG
AAAGTATGCAGATCTCCAATATGTTCATAATCCTGCGGACACCAGAGTCC
GTCTGTGTTGTCGTGTCGGTCGTGTAGCAATCAAACACAGTATTACGTTA
TAGAAGTTCTATGATGCCATGCTGAGCTGTNGCCGCTGTGGCAGNTTACA
CGTCCTCCGTAATAAACCACCAGACAGGTTATGTGCGGTATCAGAATCAT
GAAATCTACCTGATACTGATAGCCGAGATAAGCTAATGCCGAACTGGGGT
CATGAGCGCGCTCACTCTACCGAGACCGCGGCAGTAAGAGTGATTGATGT
AGCGGTAGATAACTGCCGGAAGCTAACATGCAGCTAGCGATGGTTGAGCC
TTATGATATCTTGTACATTCATCACGAGTTGTGCTATGAAGATATCCACT
TAACGATCCATTTAAGCGGTGTACGTCGTATCATTCCGGCCTATAGCGGC
GTGGCAGAGCAGTACTGCCGGAAAATGAATATTCGATTACAGTTGATACT
ACGTACGCGGCCTTCCTCGCGATTATCGTGGACGTCCCGCCGGCTTAAAT
GGTATCAGACAAATTCATCTCCGTATNTCATATAACAATGCGTCAGTGGA
CTCTCTGCGCCGCCTTGGCCTAAGTTTATGTTAGACGCAAAGTTGTTACC
CGTGCGCATCCGGTCTCTACCGCTTTACACTCTCTCCCACGCGACTTTTT
AGTACATGTTCTCTGTGCGAACGTTTAGGCATGAGCAGCAATATATCTTG
TCGATGTACTATTAACGTAACTCATNACCGACGTGGCCTGTATAGCTTCC
CTACGATTCCGTCACCCGCACTGTTGTTCTCCGTTCTCCACACAACCTCT
CACTTTATGTGTGCTCTTTGTCCTCCGCATAGCCGTACTACATCGCTGCT
ATCCATATTACCCTCGCTCCCCTACTCAATCCGNCCTTCTAATTACTCTG
TCCATCTTACTTGAGTGCTCCTCGCTACGTACTAGTCGTACGCACGATTC
TCGTATTTTGCACTTGTCGTCGTCACATTGAGCCTCGCCTCTTCTCGACA
CAATGTCTCTTCGGTAGTATCACTATTTGATCACTTCATGCTGCGCTCTC
CACCCTCGGCCTCACCAATCAATCGACANCTTGCTTGTTTGTCTCTCGCG
CTCTCATAGATAGTGCGCTACTTAAGAACAACCTACGGGATCTCGACAGC
GTCAGTTTCGCGCACGTCCGTATGANCATCTAACCACCCACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_c23.b1 MSMg01no484_c23.b1 CHROMAT_FILE:
MSMg01no484_c23.b1 PHD_FILE: MSMg01no484_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:39 2005
         (627 letters)



>mm_chr1_179635631_179636660
          Length = 1030

 Score = 1040 bits (538), Expect = 0.0
 Identities = 581/596 (97%), Gaps = 4/596 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  ccctggctttcacacctagcttggaatttgtgcaacggcatcaattgtctggtccaacag 75
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ccctggctttcacaccgagcttggaatttgtgcaacggcatcaattgtctggtccaacag 275

                                                                       
Query: 76  tcaccaaatcccatcaccttaattcccagtccaggccatgtttccctagggcctaatgca 135
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 276 tcaccaaatcccatcaccttaattcccagtccaggccacgtttccctagggcctaatgca 335

                                                                       
Query: 136 cttcctctctctgctactgcatttcctcccactgaagcacagtctacactcactactggc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cttcctctctctgctactgcatttcctcccactgaagcacagtctacactcactactggc 395

                                                                       
Query: 196 taagatttgccaactgtactgctctttgaccaggcctaagctgtgttcatctagaagcag 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taagatttgccaactgtactgctctttgaccaggcctaagctgtgttcatctagaagcag 455

                                                                       
Query: 256 gtacagcatcctcattatcagcccaagagcaggctgccgatcgcagaacttcatctcaac 315
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 456 gtacagcatcctcattatcagcccaagagcaggccgccgatcgcagaacttcatctcaac 515

                                                                       
Query: 316 attgttcccattcttgggctactcctggtgtcaacagttacagacaggttgtctgggaaa 375
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 516 atcgttcccattcttgggctactcctggtgtcaacagttacagacgggttgtctgggaaa 575

                                                                       
Query: 376 ca-a--gagatgaagagtgacagaaagtaaactagttacagaactcttgaggtcaacacc 432
           || |  |||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 576 cagaccgagatgaagagtgacagaaagtaagctagttacagaattcttgaggtcaacacc 635

                                                                       
Query: 433 cgtggagaaagggcagggt-tcccaatatcagttccccctctcctcccaacacctcctct 491
            || ||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgtagagaaagggcagggtatctcaatatcagttccccctctcctcccaacacctcctct 695

                                                                       
Query: 492 catagaacatcccctcccagttcctccctcctcttctcctttgagaagggagccccctct 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 catagaacatcccctcccagttcctccctcctcttctcctttgagaagggagccccctct 755

                                                                   
Query: 552 agataacaccatgctatacacacacacacacacacacacacacacacacacacaca 607
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agataacaccatgctacacacacacacacacacacacacacacacacacacacaca 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1030
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1020
Effective search space:   629340
Effective search space used:   629340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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