NNNNTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTCTTCACACCGGATCCCTCTATGGCAAAGCTTTTAT
TGCTTCAACATAAGGAAGACCCCGAACCCAGAAAATGGCGCTGCTTATAT
AGCCCGCAGCGTGACGTTTCAGCACCTGATGTGGCATGACAGCATCTGAT
TAGTTGCTCGTCCATCACCCCATTACTACGCCCCGAGATGGGCAGTGACT
GGGCGTGAATTCACTCTTGCACTTGTGCATAAGGCTTGTTTACTAGTTAG
GCGCAGTGGAAGCCAGCGCCATCTTATAATGGCGATTGCTCACGGCACGG
CTCTCCACAGGCCAGTCCCTGAGAAATTTAGACTTAATTCTTTGTTCTTT
CTTGGAGAACACATATCAGCCCTTCTTGGGTTAGAAGTCAGGCTTGGATG
GGTAGAACCTAGAGACTCTAGCTCTTTATGACAGGTCCACTACATCTGTT
AAAACCCAGTAAGTTTACAGAGCTCATGCCATAAACTTCCTTTATTACTG
ATGCATTAGTTCTACGGAATAATTGAATCCTTACAATCAATGAGAACTCA
TAAATTATCTTGTCCAATGGCCATGCATCAAAGTTCTAAATTAGTATAGA
TCCCCAGACTGAATCCAAAATTCATTGTAGACTAGGTGATTTAAAAAGAG
CATCTAATTAGTGGCAGAGTCTGTGTCTGCCTAGGGCCTGCT

NCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGTAAAGTGCTTACCTGGAA
TATGTATGTTCCCTGGGGTTCATCCTTGGGTATGGGAGAATATATTCCGA
AATTACCCGTGAANAAAAAGGAANAAAATGACGCTAACCGGNCCAAAAAA
AACCCCGGCCCAAACAAAAAAATATCCCCCAAAAAACGGGTTTCGGAGGC
GAGGGGGGGGGGGGGGGGGGGGTGGGGTGGGTGGGGGGGGGGGGGGGGGG
GGTGGGGGGGGGGGCGGGGGGCGGGGGGGGGGGNNNNNNNCNNNNNNNNN
NNNNNNNNNNNNNATTCGTGAGCGCNNNCNNNCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTNNTTGG

Query= MSMg01no484_e06.b1 MSMg01no484_e06.b1 CHROMAT_FILE:
MSMg01no484_e06.b1 PHD_FILE: MSMg01no484_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:46 2005
         (682 letters)



>mm_chr1_7344903_7345984
          Length = 1082

 Score = 1228 bits (635), Expect = 0.0
 Identities = 656/663 (98%)
 Strand = Plus / Plus

                                                                       
Query: 20  accggatccctctatggcaaagcttttattgcttcaacataaggaagaccccgaacccag 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 accggatccctctatggcaaagcttttattgcttcaacataaggaagaccccgaacccag 279

                                                                       
Query: 80  aaaatggcgctgcttatatagcccgcagcgtgacgtttcagcacctgatgtggcatgaca 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaaatggcgctgcttatatagcccgcagcgtgacgtttcagcacctgatgtggcatgaca 339

                                                                       
Query: 140 gcatctgattagttgctcgtccatcaccccattactacgccccgagatgggcagtgactg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gcatctgattagttgctcgtccatcaccccattactacgccccgagatgggcagtgactg 399

                                                                       
Query: 200 ggcgtgaattcactcttgcacttgtgcataaggcttgtttactagttaggcgcagtggaa 259
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 400 ggcgtgaattcactcttgcacttgcacataaggcttgtttactagttaggcgcagtggaa 459

                                                                       
Query: 260 gccagcgccatcttataatggcgattgctcacggcacggctctccacaggccagtccctg 319
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 460 gccagcgccatcttataatggcgattgctcatggcacggctctccacaggccagtccctg 519

                                                                       
Query: 320 agaaatttagacttaattctttgttctttcttggagaacacatatcagcccttcttgggt 379
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 520 agaaatttagacttaattctttgttctttcttggagaacacagatcagcccttcttgggt 579

                                                                       
Query: 380 tagaagtcaggcttggatgggtagaacctagagactctagctctttatgacaggtccact 439
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 580 tagaagtcaggcttggatgggtagaacctagagactctagctctgtatgacaggtccact 639

                                                                       
Query: 440 acatctgttaaaacccagtaagtttacagagctcatgccataaacttcctttattactga 499
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 640 acatctgttaaaacccagtaagtttacacagctcatgccataaacttcctttattactga 699

                                                                       
Query: 500 tgcattagttctacggaataattgaatccttacaatcaatgagaactcataaattatctt 559
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 700 tgcattagttctacggaataattgaatctttacaatcaatgagaactcataaattatctt 759

                                                                       
Query: 560 gtccaatggccatgcatcaaagttctaaattagtatagatccccagactgaatccaaaat 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gtccaatggccatgcatcaaagttctaaattagtatagatccccagactgaatccaaaat 819

                                                                       
Query: 620 tcattgtagactaggtgatttaaaaagagcatctaattagtggcagagtctgtgtctgcc 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tcattgtagactaggtgatttaaaaagagcatctaattagtggcagagtctgtgtctgcc 879

              
Query: 680 tag 682
           |||
Sbjct: 880 tag 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)