BAC Information

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BAC

Clone NameMSMg01-485A18
Chromosome1 (Build37)
Map Location 116,883,880 - 116,884,224
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485A18.T7 (MSMg01no485_a18.b1)MSMg01-485A18.TJ (MSMg01no485_a18.g1)
ACCAG564586AG564587
length723744
length of high quality
(start - end)		643 (78 - 720)544 (86 - 629)
definitionCHROMAT_FILE: MSMg01no485_a18.b1 PHD_FILE: MSMg01no485_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:51 2005CHROMAT_FILE: MSMg01no485_a18.g1 PHD_FILE: MSMg01no485_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTAAGAAGGTTCCAAGTGTCCACACTTTGGTCTTCGT
CCTTGAGTTTCATGTGTTTCACAAATTGTATCTTATATCTTGGGTTTTCT
ATGTTTCTGGGCTAATATTCACTTATCAGTGAGTACATATCAAGTGACTC
CTTTTGTTAGTGGGTTACCTCACTCAGGATGATCCCCTCCAGGTCCATCC
ATTTGCCTAGGAATGTCATAAATTCATTCTTTTTAATAGCTGAGTAGTAC
TCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCTTCTGTTGAGGG
GAATCTGGGTTCTTTCCAGCTTCTTGCTATTATAAAAAGGCCGCTATAAA
AATAGTGGAGCATGTGTCCTTACTGGTTGGAACATCTTCTGGATATATGC
TCAGGAGAGGTATTGCGGGATCCTCAGGTAGTACTATGTCCAATTTTCTG
AGGAACTGCCAGACTGATTTCCAGAATGGTTGTACAAGCTTGGAATCCCA
CCAACAATGGAGGAATAACTCTTCTAATAAATGACTTTTCCAAAAGACAA
ACTTTCTCACTGACCTCTTTTAATTCCAACCCCCCAAGTTTTCATTATCC
ATTATAGCAAATTTTCTTGTGTGGGATGAATGTATCATGGTGCAGTGACT
TTAGCATGGGCCAGTTTCTTATN

NNNNNNNNNCCAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTCAGAGCAATT
AGACAACAAAAGGAGATGAAGGGGATACAAACTGGAAAGGAAGAAGTCAA
AAAATCACTATTAGCAGATGATATTGTAGTATATATAAGTGACCCAAAAA
ATTCCACCAGAGAACTCCTAAACCTGATAAACAACTTCAGTGAAGTAGCT
GGATATAAAATTAACTCAAACAAATCACTGGCCTTTCTCTACACAAAGGA
TAAACAGGCTGGGAAAGAAATTAGAGAAATAACACCCTTCACAATAGTCA
CAAATAATATAAAATTCCTTGTTGTGACTCTAGCTAAGGAAGTGAAAGAT
CTGTATGATAAAAACATTAAGTCTCTGGAGAAAGAAATCAAAGAAGATCT
CAGAAGATGGAAAAATCTCCCATGCTTATGGTTTGGTAGGCTCAATATAG
TAAAAATGCCTATTTTGCTAAAAGCAATCTACAGATTCAATGCAATCACA
ATCAAAATTCCAACTCAATTCTTCAGTGAGTTAGAAAGGGCAATTTGCAA
ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTGTCAATG
ATAAAAGAATTTCTGGTGGACTCACCATGCCTGACCTAAAGCTGTACTAC
AGAGCAATTGTAATAAAAACTGCATGGTACTGGTATAGCAACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_a18.b1 MSMg01no485_a18.b1 CHROMAT_FILE:
MSMg01no485_a18.b1 PHD_FILE: MSMg01no485_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:51 2005
         (643 letters)



>mm_chr1_116883182_116884224
          Length = 1043

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Minus

                                                                        
Query: 299  gctattataaaaaggccgctataaaaatagtggagcatgtgtccttactggttggaacat 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 gctattataaaaaggccgctataaaaatagtggagcatgtgtccttactggttggaacat 984

                                                                        
Query: 359  cttctggatatatgctcaggagaggtattgcgggatcctcaggtagtactatgtccaatt 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  cttctggatatatgctcaggagaggtattgcgggatcctcaggtagtactatgtccaatt 924

                                                                        
Query: 419  ttctgaggaactgccagactgatttccagaatggttgtacaagcttggaatcccaccaac 478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  ttctgaggaactgccagactgatttccagaatggttgtacaagcttggaatcccaccaac 864

                                                                        
Query: 479  aatggaggaataactcttctaataaatgacttttccaaaagacaaactttctcactgacc 538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 863  aatggaggaataactcttctaataaatgacttttccaaaagacaaactttctcactgact 804

                                                                        
Query: 539  tcttttaattccaaccccccaagttttcattatccattatagcaaattttcttgtgtggg 598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  tcttttaattccaaccccccaagttttcattatccattatagcaaattttcttgtgtggg 744

                                                         
Query: 599  atgaatgtatcatggtgcagtgactttagcatgggccagtttctt 643
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  atgaatgtatcatggtgcagtgactttagcatgggccagtttctt 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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