BAC Information

Click to search

BAC

Clone NameMSMg01-485C10
Chromosome1 (Build37)
Map Location 81,682,399 - 81,682,933
singlet/doubletsinglet
Overlap geneEG621020
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485C10.T7 (MSMg01no485_c10.b1)MSMg01-485C10.TJ (MSMg01no485_c10.g1)
ACCAG564664AG564665
length1,176731
length of high quality
(start - end)		---543 (81 - 623)
definitionCHROMAT_FILE: MSMg01no485_c10.b1 PHD_FILE: MSMg01no485_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:59 2005CHROMAT_FILE: MSMg01no485_c10.g1 PHD_FILE: MSMg01no485_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCTGTTGACACATCTCCCCAGCGTTTGAAGGAGACGGCGCGGGAGGT
CTTTTTCAGGAGAGAGGGATGCGTTGGATGCGGAGGAGGATCGCCCACCC
GAGGACGCGCGCGGCGCGACCGGCAGCCAATCGCGAACGGACGTGTATAT
GTGACGAAAATGACAAACGCCAAAACAGAAGCAGAGAAGAGGAGAAAGAA
AAGAGCAAAGCAGGGAAGATTCTCACGCCGCCTTCCCCCGTTGGTGGCAG
CTTATTCTTTAGAAACAACATGCTTGAATATTTAGAGAGGAACACAGGCA
AGATAAGAGGAGAGAAATAATACGCATATTGGATCCACGATAGACAAGTT
ATACACCACCAAATCATACAAGGAGAAATACAGAAAACCCGACTCGGCTG
AGAGCCGTGGTGTAGGAGAGCGGGGGTGGGCGGTCAGAAACGGAGAGCGT
CCAGCCAGAAATCGGAGGCGCCGTTGTTAAGTGGGAATACGCCGTGACCA
CGCCACTCCGACCCCCCCTCATTGAATGGAATCATGGCACGATGAGTCTG
GGAGAACAAATATTATTTTCACAGTAAAAATACCACCGTTAGTGTGTTTG
TTATGTGTACAACTCAAACCTGGGCCGCCGATGCGTCAAAGTGTAGCGCG
ACAACCACAGGCCGTTTGAGTATCAGAGAGTGCGAGAACACAGAAATTAA
ATGAGAAATACGGTGAATCACACGATCACAGATAAACGCGTACACGAAAC
CTATAATAATATCGAGGAGATTGATGCGGGCAGCGACTGTAAGTAATCTA
GACAGCGAGAGATAGGCGCCGAATCGATATTAAATTATAGCGACGTTGTC
ATGCTCAGGAGTATACCGGAGGAATGGAGGGGAGACCGCGTAGAGCTAGT
AACATAACAAATATATACATCCTCGCGCGCCGTTATGGTTTGAGCAATAC
GAGTATCGTAAATAAGTCAGAGTAGGAGACGGATTCGTTAGGTTGTAGTA
GACGGATAGAGGACGGGATCACACGCAGCATATGACCAAATAATATGAGA
GACCGACCGCGGGCGTGAATGTGACAGTGGGATAGTACTGACACCTGTTG
CGATGGTGGTGAAAGAGTATGTGTATGGCTCGCTGTACGCCCGATCGATA
GCGGTTGTATAGAACGGATAGACAAN

GAGGGTCGATGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCCTGCAAGGAAGACCC
TCTTCTCCCTACCAGAAGCTTGAGAACCACGTCAGTACAGATTCCAGTGG
AGAATTAGTGGCAGCTTTCCAATGGGGAAGAACTTTACTCCAACACATCA
ACAACCATTCCTTATGTCTTGAGTGTCCTTGGGTTGAGCAAATCAAGACA
AAAAGAAAAGGTCTGATCAAGGCACAACAGTTCTCAAAGAGTAAGAGGAC
AAGACAGCTGTGATCATGGACAGTAGGGATGTTTTCTGTGTGATGATGCG
TCCTACAGCAAAGGAGCAGGAGGAAGACATACTGTCTTTTAGTTTTCTTG
CTTGACTGACTCAGCTCTAGACTGTTTAATTTAGAGAGGGAAGCACCAGA
GAGCATTCACCATGCAAGAAAAAGATGTTCTAGGCTGTAAATACCATCCT
GCTAATGGCAGAGTGAGGTAGACTTATTTATTTAGGCGGAATGGTCATCT
CTCTCTTTGCACCTCCTATGTCTCTTCTTTTACTTTGTTCTGTTTCTGCT
CTCCTCTCCTTCCTCACTACTTGGTTGGATGGAAACTGCTGGAAATGCAC
ACAATCAAAATGATGGCGATTAAACCAGAAAATGCTAGTCTGCCTAATTC
TCACTGGGAACAGAGATGACATAAATGTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_c10.g1 MSMg01no485_c10.g1 CHROMAT_FILE:
MSMg01no485_c10.g1 PHD_FILE: MSMg01no485_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:59 2005
         (543 letters)



>mm_chr1_81681995_81682937
          Length = 943

 Score =  980 bits (507), Expect = 0.0
 Identities = 531/543 (97%), Gaps = 8/543 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcctgcaaggaagaccctcttctccctaccagaagcttgagaaccacgtcagtacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cactcctgcaaggaagaccctcttctccctaccagaagcttgagaaccacgtcagtacag 880

                                                                       
Query: 61  attccagtggagaattagtggcagctttccaatggggaagaactttactccaacacatca 120
           |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 879 attccattggagaattagtggcagctttcc-atagggaagaactttactccaacacatca 821

                                                                       
Query: 121 acaaccattccttatgtcttgagtgtccttgggttgagcaaatcaagacaaaaagaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 acaaccattccttatgtcttgagtgtccttgggttgagcaaatcaagacaaaaagaaaag 761

                                                                       
Query: 181 gtctgatcaaggcacaacagttctcaaagagtaagaggacaagacagctgtgatcatgga 240
           ||||| |||||||||||       ||||||||||||||||||||||||||||||||||||
Sbjct: 760 gtctgttcaaggcacaa-------caaagagtaagaggacaagacagctgtgatcatgga 708

                                                                       
Query: 241 cagtagggatgttttctgtgtgatgatgcgtcctacagcaaaggagcaggaggaagacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 707 cagtagggatgttttctgtgtgatgatgcgtcctacagcaaaggagcgggaggaagacat 648

                                                                       
Query: 301 actgtcttttagttttcttgcttgactgactcagctctagactgtttaatttagagaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 actgtcttttagttttcttgcttgactgactcagctctagactgtttaatttagagaggg 588

                                                                       
Query: 361 aagcaccagagagcattcaccatgcaagaaaaagatgttctaggctgtaaataccatcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aagcaccagagagcattcaccatgcaagaaaaagatgttctaggctgtaaataccatcct 528

                                                                       
Query: 421 gctaatggcagagtgaggtagacttatttatttaggcggaatggtcatctctctctttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gctaatggcagagtgaggtagacttatttatttaggcggaatggtcatctctctctttgc 468

                                                                       
Query: 481 acctcctatgtctcttcttttactttgttctgtttctgctctcctctccttcctcactac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 acctcctatgtctcttcttttactttgttctgtttctgctctcctctccttcctcactac 408

              
Query: 541 ttg 543
           |||
Sbjct: 407 ttg 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |