BAC Information

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BAC

Clone NameMSMg01-485F11
Chromosome1 (Build37)
Map Location 74,038,839 - 74,070,941
singlet/doubletdoublet
Overlap geneTns1
Upstream geneTnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneRufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485F11.T7 (MSMg01no485_f11.b1)MSMg01-485F11.TJ (MSMg01no485_f11.g1)
ACCAG564809AG564810
length756742
length of high quality
(start - end)		313 (72 - 384)530 (79 - 608)
definitionCHROMAT_FILE: MSMg01no485_f11.b1 PHD_FILE: MSMg01no485_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:15 2005CHROMAT_FILE: MSMg01no485_f11.g1 PHD_FILE: MSMg01no485_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,070,629 - 74,070,941)(74,038,839 - 74,039,368)
sequence
TTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCAGAATAATTCGGGCAGGAAGTGGCATGGGGGTCTGGAGGGA
AGGCTGAGAAGTGGGCCTGCAGGAGTGACCCCACAGACCCCCAGAGACTG
TGCATGGCAGCTGTGTTGGGACATTTAGACTGGATCATCAAGCTCAAGAT
GGTAAGGCTGAGTAGTAACAAGGCTTGGGCACATTTTAGAAATGGCTTTC
TGGTTGCTAAGAAGAGACCAAGGGCAAGAGAGGAGGTCCTGGGATGGGTT
AATGTCACTGTGTCTTTGACTCAGGACACTGCAGTGGTCGCTTGGGAGAG
GGACTGCCAGACTTGGGGGAATAATGGATAGGGGGAGAAGAGGAGGATGC
ACAGATTTTGGGCTTGAATCATGTTGGGTGGCCCAGAGGATGGTGACAGT
GGCTAGTGTCAATGCCCAGTCATGCTTTCCGCTGTGTCCCTTTTTCCCAT
CCCATGTCTCCCGGCTGCTTGCCTGCCTCTTGCTCTCATGACCCTGGGTC
TTGAGCTTCCAGGCATTGTGCTCACTAAGTGTTCGGCTCGATACTTTATA
TTTTTGGGGCCTCCTGGAATTTTAATTGCCTCCCCCAGTGGGCTTAACTT
TGCGTCTATTTTCTCCGCTTTCTCCAAAACTGTGGGGTAATTATTTAAAG
CCGGGGTAACATTTTGGTTAATCCCTCCTGCGTAAACCTTTGGACGTTAT
TGCCTT

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAGCCAGTCAGCACAATA
TGGGGACAGTCACCAGCAGCCTGGCCTCTGTTCCTGTCCTGCCCACCAGT
CCTGCTGACAGGCAAGGCTTAACAAGCAAAGGGCATGACCTGGGACCCAG
GCTCAAAGTAGGGTCTTAGGCAAGCAATGTCCCTTTCCCAGAGCTGTTGT
CCTCACAGGGGTGTGCCAAGGTTTACAACGTGAGACTGTGATCTCAAAGC
TTCCAGAAAGGCCTGAGCCTAGCCCTTCAGCTCCCCTCCAAGGCCAGTTC
AAGGCTGACAGGGTGTCAGGAAAGGAAAGGGTCCCCTGATGCTCACAGTC
CTTTGGATACACAGACTGCCCATTCCCGGCCCTCTGAGAGAAGTCTAAAG
TGTGCAGAAGTGGGGCTTCCCAGTGGCCTTCAGCCCTCAAGGCCTCCTTC
AGTCCTCTCTAATTTCACAAAACACTAAATGAAAAGAGCTGCTATTTGGC
AGGGTCCACAGAGCATGCCTAAGCCAGATGTCCACTTTCAGACACACGAT
CTGAGGCCCAGAGCAGTCTGTTGCTTGCTTAACATCCCATAATGACAGGC
ACCAGAATCCAAAATAGAAGCCAAGGGTCCCTCTCTAAAAACCACTTTAG
CAGCAAAATAAACCCTGGGGACAGGCACATATAGATAAGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_f11.b1 MSMg01no485_f11.b1 CHROMAT_FILE:
MSMg01no485_f11.b1 PHD_FILE: MSMg01no485_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:15 2005
         (313 letters)



>mm_chr1_74070429_74071141
          Length = 713

 Score =  543 bits (281), Expect = e-159
 Identities = 305/313 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaggaagtggcatgggggtctggagggaaggctgagaagtgggcctgcaggagtgaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gcaggaagtggcatgggggtctggagggaaggctgagaagtgggcctgcaggagtgaccc 454

                                                                       
Query: 61  cacagacccccagagactgtgcatggcagctgtgttgggacatttagactggatcatcaa 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cacagacccccagagaccgtgcatggcagctgtgttgggacatttagactggatcatcaa 394

                                                                       
Query: 121 gctcaagatggtaaggctgagtagtaacaaggcttgggcacattttagaaatggctttct 180
           ||||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||
Sbjct: 393 gctcaagatggtaaggctgaggagcaacatggctcgggcacattttagaaatggctttct 334

                                                                       
Query: 181 ggttgctaagaagagaccaagggcaagagaggaggtcctgggatgggttaatgtcactgt 240
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 333 ggttgccaagaagagaccaagggcaagagaggaggtcctgagatgggttaatgtcactgt 274

                                                                       
Query: 241 gtctttgactcaggacactgcagtggtcgcttgggagagggactgccagacttgggggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtctttgactcaggacactgcagtggtcgcttgggagagggactgccagacttgggggaa 214

                        
Query: 301 taatggatagggg 313
           ||| |||||||||
Sbjct: 213 taagggatagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_f11.g1 MSMg01no485_f11.g1 CHROMAT_FILE:
MSMg01no485_f11.g1 PHD_FILE: MSMg01no485_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:15 2005
         (530 letters)



>mm_chr1_74038639_74039568
          Length = 930

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaagccagtcagcacaatatggggacagtcaccagcagcctggcctctgttcctgtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 catcaagccagtcagcacaatatggggacagtcaccagcagcctggcctccgttcctgtc 260

                                                                       
Query: 61  ctgcccaccagtcctgctgacaggcaaggcttaacaagcaaagggcatgacctgggaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ctgcccaccagtcctgctgacaggcaaggcttaacaagcaaagggcatgacctgggacct 320

                                                                       
Query: 121 aggctcaaagtagggtcttaggcaagcaatgtccctttcccagagctgttgtcctcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctcaaagtagggtcttaggcaagcaatgtccctttcccagagctgttgtcctcacag 380

                                                                       
Query: 181 gggtgtgccaaggtttacaacgtgagactgtgatctcaaagcttccagaaaggcctgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtgtgccaaggtttacaacgtgagactgtgatctcaaagcttccagaaaggcctgagc 440

                                                                       
Query: 241 ctagcccttcagctcccctccaaggccagttcaaggctgacagggtgtcaggaaaggaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ctagcccttcagctcccctccaaggccagttcaaggctgacagggtgtcaggaaagaaaa 500

                                                                       
Query: 301 gggtcccctgatgctcacagtcctttggatacacagactgcccattcccggccctctgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtcccctgatgctcacagtcctttggatacacagactgcccattcccggccctctgag 560

                                                                       
Query: 361 agaagtctaaagtgtgcagaagtggggcttcccagtggccttcagccctcaaggcctcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagtctaaagtgtgcagaagtggggcttcccagtggccttcagccctcaaggcctcct 620

                                                                       
Query: 421 tcagtcctctctaatttcacaaaacactaaatgaaaagagctgctatttggcagggtcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagtcctctctaatttcacaaaacactaaatgaaaagagctgctatttggcagggtcca 680

                                                             
Query: 481 cagagcatgcctaagccagatgtccactttcagacacacgatctgaggcc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagcatgcctaagccagatgtccactttcagacacacgatctgaggcc 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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