Query= MSMg01no485_h14.b1 MSMg01no485_h14.b1 CHROMAT_FILE:
MSMg01no485_h14.b1 PHD_FILE: MSMg01no485_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:26 2005
(656 letters)
>mm_chr1_192931418_192932472
Length = 1055
Score = 1199 bits (620), Expect = 0.0
Identities = 644/652 (98%), Gaps = 1/652 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcttgtttggctccattaggtagagcctggctcaatgggtggatgtggaggag 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcttgtgtggctccattaggtagagcctggctcaatgggtggatgtggaggag 264
Query: 65 aggagttttcagtacaaagaggatggaatattgcagaaatggaagggactgtcccttgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggagttttcagtacaaagaggatggaatattgcagaaatggaagggactgtcccttgaa 324
Query: 125 gatgggggtgtccaacccaagatggatgtgtgagccagccctgcatatgaaaagttccta 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 gatgggggtgtccaacccaagatggatgtgtgagccagccctgcatatgagaagttccta 384
Query: 185 acagtttggggggcaggagtgacaaggaagttctttgatctccttcagttctgagcctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagtttggggggcaggagtgacaaggaagttctttgatctccttcagttctgagcctct 444
Query: 245 acagccttaagcagtagaaaaaaaaaactgcatgtgtctgtgcattgttagtacagccga 304
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 acagccttatgcagtagaaaaaaaagactgcatgtgtctgtgcattgttagtacagccga 504
Query: 305 aggcatgtcgtcctgggtgctgttcccggtgttgggatggctgtgagcccaccagaaccc 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 aggcatgtcgtcctgggtgctgttcctggtgttgggatggctgtgagcccaccagaaccc 564
Query: 365 ttcaaaaaacaagtcagtgttggggatgagggctgatgcagatggaaaggagggactact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcaaaaaacaagtcagtgttggggatgagggctgatgcagatggaaaggagggactact 624
Query: 425 tcggagtgatggagatgtcccgtgtgttagcacaggttctttgcttctgtcataatgccc 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 tcggagtgatggagatgtcccgtgtgttagcacaggttccttgcttctgtcataatgccc 684
Query: 485 tgaatcacagacacttaatatagacacattatacttcagtagtgttggttcagaaaggaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaatcacagacacttaatatagacacattatacttcagtagtgttggttcagaaaggaa 744
Query: 545 agctgtgctttttttagggcgatttcattctcgtggaaagacagatctgaagagtctagt 604
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 agctgtgctttttt-agggcgatttcattctcgtggaaagacagatctgaagagtctggt 803
Query: 605 gtagcccaggctggccttgaattcttgaccctcctgcctctacctcccaaga 656
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtagcccaggctggccttgaattcttgaccctcctgcctctacctcccaaga 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space: 675070
Effective search space used: 675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_h14.g1 MSMg01no485_h14.g1 CHROMAT_FILE:
MSMg01no485_h14.g1 PHD_FILE: MSMg01no485_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:26 2005
(576 letters)
>mm_chr1_193091516_193092491
Length = 976
Score = 1067 bits (552), Expect = 0.0
Identities = 570/576 (98%)
Strand = Plus / Minus
Query: 1 accaagaaggtgggggctggaagacccaagtgctaagcactggggcacagctgcattcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 accaagaaggtgggggctggaagacccaagtgctaagcactggggcacagctgcattcac 600
Query: 61 acagaggcacaggggccagccgggaagctgccccctgtagctgtgccacagagctctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acagaggcacaggggccagccgggaagctgccccctgtagctgtgccacagagctctgtg 540
Query: 121 cacagatttgcggtttctgtgctggtgtgcgacactctaatgtacaaccctggaattacg 180
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 539 cacagatttgcagtttctgtgctggtgtgtgacactctaatttacaaccctggaattacg 480
Query: 181 acacagggcaatgtggccaaggagaatgtcaggaattcagaagggcaaaggtgactgagg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 479 acacagggcaatgtggccaaggagaatgtcaagaattcagaagggcaaaggtgactgagg 420
Query: 241 agagctggaaccctgtgatgttttgagcagagagggagagctcacatccatgaaaacagc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agagctggaatcctgtgatgttttgagcagagagggagagctcacatccatgaaaacagc 360
Query: 301 aagatgacatttagaacgaggaagcagctccagcaagggcctggagatgacattccaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aagatgacatttagaacgaggaagcagctccagcaagggcctggagatgacattccaagg 300
Query: 361 aggaggaagtagggtggagtgtggaagacagcagcccattctttctggctggtccctaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aggaggaagtagggtggagtgtggaagacagcagcccattctttctggctggtccctaaa 240
Query: 421 ggggaacgtagacgtgaagctgaccggaagacactttactgttggggattggtcctattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggggaacgtagacgtgaagctgaccggaagacactttactgttggggattggtcctattg 180
Query: 481 ctttgaattagtccagcccccccaaatggaaatctgcctgtccaaaccgctgaaggttct 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 179 ctttgaattagtccagcccccccaaatggaaatctgcctgttcaaaccgctgaaggttct 120
Query: 541 tgtccccaattggcttttgatcaaccaataaagagc 576
||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgtccccaattggcttttgatcaaccaataaagagc 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
