BAC Information

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BAC

Clone NameMSMg01-485H21
Chromosome1 (Build37)
Map Location 178,693,431 - 178,842,817
singlet/doubletdoublet
Overlap geneCep170, Sdccag8, LOC666235
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485H21.T7 (MSMg01no485_h21.b1)MSMg01-485H21.TJ (MSMg01no485_h21.g1)
ACCAG564923AG564924
length733764
length of high quality
(start - end)		569 (78 - 646)516 (84 - 599)
definitionCHROMAT_FILE: MSMg01no485_h21.b1 PHD_FILE: MSMg01no485_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:28 2005CHROMAT_FILE: MSMg01no485_h21.g1 PHD_FILE: MSMg01no485_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,693,431 - 178,693,999)(178,842,345 - 178,842,817)
sequence
NNNAAACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGTGTGGCTTACAGCTTTAGGTTTCACATTTATGATTT
AGTTAATTAATTTATTAATTATTTTTGAGCATCTCATACTGTAATCCAGA
CTGACCTACATACTCACCACATTCCTCCTGCCTCAGCTTCACAAGAGCTG
TAATTATAGGATAAATAAGCCACCATGGCCAGCTTTTACAACATACTGAA
AAAATTAAGATAACAATGGATAGTCCAGTTTAACCTAGAATGCATTCATC
TCTGTGTGAGGCACACAGACATTTGCTTGTGACATCCTGCATGTGGAAAC
AGTGCACAGCTAGTTACATGCCTACACGCATACTCTGAGGCATGCACAAT
TTTCTTCACTTCTAAAATACTACACTCTGACATGTGATCTGATAATGGTC
TAGAACTTGGGAGTGCTTCAGACACCAAATTTGCAAGGGTTTCCATTTTT
GATTCTAGATTCTGTCACTAGATTTCATCCATATGTACTTCGTTATTTGA
TTTACCACCTGAATAGAAAGTGGCTTACCTGTCATTATTATCATGAATAC
CTCAAGGTACTTGCATTTTGTTAGCCTTAAGTTTTTTATTTTCTCCCTGT
CCTCCTCTGACCTGGTGTCAGTCACAATTCCAAATTTGTTCACAACAAAA
TCTGGCTCTCTCATCTAGGCAGGACTTCTTTAA

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTGTGACCTTATAA
AATTAGTTTTACAGTCTTGTAACTTTAAAAATGAAGATGTACTATATTAG
TAATTTTAAAATTACATAGATTAAGAATGAATAGAGAGTTTCATTAAGAA
AATTCCTATTGTATATTTCTCACAAATTTCTAGGAGAGAAATACAAAAAG
GTTATATTGCCTTAAACCCAAAGAATAATTTTCCTGGAAAGCAAATGAAG
CAGACAGAGCTTATTAAGCCTGCTCCCAAATATTATTGAATTTAAAATTA
TTTTGCAGCTGGGGATGCTAGAACACTCTGGTCCTCCCAGCACTTAGGAG
GGTATGTATATGTCAGGGGCCTGGCAGGGCTACGGAATAGACTCAGCTAG
CCAGGATTACAGAAACCCTGTCTCAAATGTTCTTAAGTGCCCTGTCATCT
TTAATATAGGGTGACTTCTTTGTGTTACAGAAGGTAAAATGGAATAAAAG
GACCAAAATACAAGAGAGTAGGGAGACTAGAATTTAAAAATCCTTGCACA
GCCAGAAGGAAGAGCACGTGGTTTTGAGGCTGACATAATTTGACAATGTC
AATTGTGATTTGGAAAGCAGTGGTCAAATTAATACAATATGTTTTGAAAA
GGAAAGCANTGCATGATGCTGAATGGGAAGGCAGAACCCTCTGGATTAGG
ACAGACTTGCTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_h21.b1 MSMg01no485_h21.b1 CHROMAT_FILE:
MSMg01no485_h21.b1 PHD_FILE: MSMg01no485_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:28 2005
         (569 letters)



>mm_chr1_178693231_178694199
          Length = 969

 Score = 1100 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaggtttcacatttatgatttagttaattaatttattaattatttttgagcatctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaggtttcacatttatgatttagttaattaatttattaattatttttgagcatctcat 260

                                                                       
Query: 61  actgtaatccagactgacctacatactcaccacattcctcctgcctcagcttcacaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtaatccagactgacctacatactcaccacattcctcctgcctcagcttcacaagag 320

                                                                       
Query: 121 ctgtaattataggataaataagccaccatggccagcttttacaacatactgaaaaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtaattataggataaataagccaccatggccagcttttacaacatactgaaaaaatta 380

                                                                       
Query: 181 agataacaatggatagtccagtttaacctagaatgcattcatctctgtgtgaggcacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataacaatggatagtccagtttaacctagaatgcattcatctctgtgtgaggcacaca 440

                                                                       
Query: 241 gacatttgcttgtgacatcctgcatgtggaaacagtgcacagctagttacatgcctacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacatttgcttgtgacatcctgcatgtggaaacagtgcacagctagttacatgcctacac 500

                                                                       
Query: 301 gcatactctgaggcatgcacaattttcttcacttctaaaatactacactctgacatgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatactctgaggcatgcacaattttcttcacttctaaaatactacactctgacatgtga 560

                                                                       
Query: 361 tctgataatggtctagaacttgggagtgcttcagacaccaaatttgcaagggtttccatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgataatggtctagaacttgggagtgcttcagacaccaaatttgcaagggtttccatt 620

                                                                       
Query: 421 tttgattctagattctgtcactagatttcatccatatgtacttcgttatttgatttacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgattctagattctgtcactagatttcatccatatgtacttcgttatttgatttacca 680

                                                                       
Query: 481 cctgaatagaaagtggcttacctgtcattattatcatgaatacctcaaggtacttgcatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgaatagaaagtggcttacctgtcattattatcatgaatacctcaaggtacttgcatt 740

                                        
Query: 541 ttgttagccttaagttttttattttctcc 569
           |||||||||||||||||||||||||||||
Sbjct: 741 ttgttagccttaagttttttattttctcc 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_h21.g1 MSMg01no485_h21.g1 CHROMAT_FILE:
MSMg01no485_h21.g1 PHD_FILE: MSMg01no485_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:28 2005
         (516 letters)



>mm_chr1_178842345_178843260
          Length = 916

 Score =  884 bits (457), Expect = 0.0
 Identities = 469/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttgtgaccttataaaattagttttacagtcttgtaactttaaaaatgaagatgtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttgttgtgaccttataaaattagttttacagtcttgtaactttaaaaatgaagatgtact 414

                                                                       
Query: 61  atattagtaattttaaaattacatagattaagaatgaatagagagtttcattaagaaaat 120
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 413 atattagtaatttttaaattacatagattaagaacgaatagagagtttcattaagaaaat 354

                                                                       
Query: 121 tcctattgtatatttctcacaaatttctaggagagaaatacaaaaaggttatattgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcctattgtatatttctcacaaatttctaggagagaaatacaaaaaggttatattgcctt 294

                                                                       
Query: 181 aaacccaaagaataattttcctggaaagcaaatgaagcagacagagcttattaagcctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aaacccaaagaataattttcctggaaagcaaatgaagcagacagagcttattaagcctgc 234

                                                                       
Query: 241 tcccaaatattattgaatttaaaattattttgcagctggggatgctagaacactctggtc 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 233 tcccaaatattattgaatttaaaattattttgcagctggagatgctagaacactctggtc 174

                                                                       
Query: 301 ctcccagcacttaggagggtatgtatatgtcaggggcctggcagggctacggaatagact 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 173 ctcccagcacttaggagggtatgtatatgtcaggggcctggcagggctacagaatagact 114

                                                                       
Query: 361 cagctagccaggattacagaaaccctgtctcaaatgttcttaagtgccctgtcatcttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cagctagccaggattacagaaaccctgtctcaaatgttcttaagtgccctgtcatcttta 54

                                                                
Query: 421 atatagggtgacttctttgtgttacagaaggtaaaatggaataaaaggaccaa 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  atatagggtgacttctttgtgttacagaaggtaaaatggaataaaaggaccaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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