Query= MSMg01no485_n23.b1 MSMg01no485_n23.b1 CHROMAT_FILE:
MSMg01no485_n23.b1 PHD_FILE: MSMg01no485_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:59 2005
(604 letters)
>mm_chr1_181056227_181057236
Length = 1010
Score = 1046 bits (541), Expect = 0.0
Identities = 591/611 (96%), Gaps = 8/611 (1%)
Strand = Plus / Minus
Query: 1 aaacaccccatggaagcagtagttgttcgggagaaagcaaaaagaaaaaaaaacaaaagg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 810 aaacaccccatggaagcagtagttgttcgggagaaagcaaaaag-aaaaaaaacaaaagg 752
Query: 61 agataaatagtatcaaattctctctttgtgcagaaagttctatttgatcattttcaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 agataaatagtatcaaattctctctttgtgcagaaagttctatttgatcattttcaaagt 692
Query: 121 taaaggtccagtccttctttgaatctaaccataaactttatgggtgctaggacttgg--- 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 taaaggtccagtccttctttgaatctaaccataaactttatgggtgctaggacttggatg 632
Query: 178 ---ttcccttacaggcgccagaggctttaaactccttttcctttaaactcctgtgttgtc 234
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgcttcccgtacaggcgccagaggctttaaactccttttcctttaaactcctgtgttgtc 572
Query: 235 cactctacttggttatggtttagtgggttggcttttgtctttaagatggagattc-tttt 293
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 571 cactctacttggttatggcagagtgggttggcttttgtctttaagatggagattcttttt 512
Query: 294 tttttaaatgttttcactccgtaccttgtttataaatgtttggcttttgccagatgtttt 353
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttttttaatgttttcactccgtaccttgtttataaatgtttggcttttgccagatgtttt 452
Query: 354 gggttgagctgagtgggggagccttcagggtgagctgatttccaagtgtttattctacag 413
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 451 gggttgagctgagtgggggagccttcagggtgagccgatttccaagtgtttattctacag 392
Query: 414 catttctaatgtaaatgtgtggcgtggaaagactgtgagtgcttttgctgcattaggtct 473
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 391 catttctaatgtaaatgtgtggcatggaaagactttgagtgcttttgctgcattaggtct 332
Query: 474 gtcctgacagctccgtgtttctgaattcttataatgattctatctggctggctgtccagc 533
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtcctgacagctccatgtttctgaattcttataatgattctatctggctggctgtccagc 272
Query: 534 ctggttttcacgaagagctcccagataattagccaaaggacacccacacataacacctca 593
||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||
Sbjct: 271 ctggttttcacgaagagctcccagatagttagccaaaggacactcacacaaaacacctca 212
Query: 594 tggtttgaaaa 604
|||||||||||
Sbjct: 211 tggtttgaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1010
Length adjustment: 10
Effective length of query: 594
Effective length of database: 1000
Effective search space: 594000
Effective search space used: 594000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_n23.g1 MSMg01no485_n23.g1 CHROMAT_FILE:
MSMg01no485_n23.g1 PHD_FILE: MSMg01no485_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:00 2005
(553 letters)
>mm_chr1_180926349_180927301
Length = 953
Score = 1040 bits (538), Expect = 0.0
Identities = 544/546 (99%)
Strand = Plus / Plus
Query: 8 aaaaaaaatgcagctctcagctagtatgggctatttcaaaacctaggaggctcctgggga 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aaaaaaaatgcagctctcagctagtatgggctatttcaaaacctaggaggctcctgggga 267
Query: 68 ttctcagatccagctgtttgaagtgaatgcagcagcccccgggtcctttctttctgtgac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttctcagatccagctgtttgaagtgaatgcagcagcccccgggtcctttctttctgtgac 327
Query: 128 ctgtggcttggggtcagtggctttagcaagcatagcctgaagtttagcttcctctgtgct 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgtggcttggggtcagtggctttagcaagcatagcctgaagtttagcttcctctgtgct 387
Query: 188 caccatagaggtgaaagcttcagtctagaagtccctctcctcccctttgagcgcagagtg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caccatagaggtgaaagcttcagtctagaagtccctctcctcccctttgagcgcagagtg 447
Query: 248 tctgggaagcaacacagtgaagagcaagtttatgtaagcgagcatattctgcattgggac 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctgggaagcaacacagtgaagagcaagtttatgtaagcgagcatattctgcattgggac 507
Query: 308 gtcaatccctcgagtggacgggccacataccgcacactgctcttcatgtactttgacccc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtcaatccctcgagtggacgggccacataccgcacactgctcttcatgtactttgacccc 567
Query: 368 agacagtgacagaggaggctctgtctgtcctgccctagatgagtttctccttgatgttta 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agacagtgacagaggaggctctgtctgtcctgccctagatgagtttctccttgatgttta 627
Query: 428 ataataggccagcgaatcaccagaggactgcttgtggggcacctcacctagatctgtgtg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ataataggccagcgaatcaccagaggactgcttgtggggcacctcacctagatctgtgtg 687
Query: 488 ctgggactcacagaaactatgtgggtcactggcattaccccaccactctgaggagttgta 547
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 688 ctgggactcacagaaactatgtgggtcgctggcattaccccaccactctgaggagtcgta 747
Query: 548 acagat 553
||||||
Sbjct: 748 acagat 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
