Query= MSMg01no485_n24.b1 MSMg01no485_n24.b1 CHROMAT_FILE:
MSMg01no485_n24.b1 PHD_FILE: MSMg01no485_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:00 2005
(577 letters)
>mm_chr1_180204968_180205946
Length = 979
Score = 986 bits (510), Expect = 0.0
Identities = 525/534 (98%), Gaps = 8/534 (1%)
Strand = Plus / Minus
Query: 46 gagcatgttgagcgaaccctgctttttaaatttatttagggtcctagagatggctctgta 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 gagcatgttgagcgaaccctgctttttaaatttatttagggtcctagagatggctctgta 920
Query: 106 ggtaaaagagcctatggtgcaaacctgggaagccagtccaatttcctgtggagggtcctc 165
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 919 ggtaaaagagcctatggtgcaaacctgggaagccagtccaattccctgtggagggtcctc 860
Query: 166 tgactggcacacgcacaatagtaatacttggttaaaaaaaattgtttcacaatttcatat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tgactggcacacgcacaatagtaatacttggttaaaaaaaattgtttcacaatttcatat 800
Query: 226 atatgcacacacacacacacacacacgtatatttagttcatacgttgaccatattcatgc 285
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atatg------cacacacacacacacgtatatttagttcatacgttgaccatattcatgc 746
Query: 286 ctcttgtctttcattctcctgcccactctctggaatcgttcttttcccaagtctttagtg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcttgtctttcattctcctgcccactctctggaatcgttcttttcccaagtctttagtg 686
Query: 346 tgggagtgtgagaattgctgtcagagataaaagcaaaggcgcctccaccaaaagatttcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgggagtgtgagaattgctgtcagagataaaagcaaaggcgcctccaccaaaagatttcc 626
Query: 406 gcctccaaca--ccccccccccccgcgtcccctccaccccttggggtgtggggtgacctt 463
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctccaacaccccccccccccccgcgtcccctccaccccttggggtgtggggtgacctt 566
Query: 464 tgactcttcttcctcaataaaaacttgttaatgatactctggcctggcatacctgtcagg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgactcttcttcctcaataaaaacttgttaatgatactctggcctggcatacctgtcagg 506
Query: 524 atgaaagtgaaatgtcaccagcgaaagtgctagaagcactctagagggcttaga 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgaaagtgaaatgtcaccagcgaaagtgctagaagcactctagagggcttaga 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 979
Length adjustment: 10
Effective length of query: 567
Effective length of database: 969
Effective search space: 549423
Effective search space used: 549423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_n24.g1 MSMg01no485_n24.g1 CHROMAT_FILE:
MSMg01no485_n24.g1 PHD_FILE: MSMg01no485_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:00 2005
(560 letters)
>mm_chr1_180043526_180044486
Length = 961
Score = 1062 bits (549), Expect = 0.0
Identities = 558/561 (99%), Gaps = 1/561 (0%)
Strand = Plus / Plus
Query: 1 tctgtcttagcttgccttgcaactgtaataaaacacctaaaaaaaaaaaaaa-cctagat 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tctgtcttagcttgccttgcaactgtaataaaacacctaaaaaaaaaaaaaaacctagat 260
Query: 60 tcaaagaaggaaggagttactttgaggttttgaggtcccacaggggagaccccattgctt 119
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tcaaagaaggaaggagttactttgaggttttgaggtcccacagaggagaccccattgctt 320
Query: 120 ctagaactgtggcagggcagtagcatcagaacaagagtagaagaggagaagagggtccat 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ctagaactgtggcagggcagtagcatcagaacaagaggagaagaggagaagagggtccat 380
Query: 180 gagtcagacaccaaggaggaaaaaactgaggttccggtttccctttaaggattccaaccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtcagacaccaaggaggaaaaaactgaggttccggtttccctttaaggattccaaccc 440
Query: 240 ctcaggtccatcatcctgtggtccatgtcaaatgtgagctgttaagtcattcttatccaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaggtccatcatcctgtggtccatgtcaaatgtgagctgttaagtcattcttatccaa 500
Query: 300 accaaaaccagctacttcttaactcactcatttccatgcatgctttatcatgagttccca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaaaaccagctacttcttaactcactcatttccatgcatgctttatcatgagttccca 560
Query: 360 actgaaagttgctacatactatcctcaatcaaaaagaaaaactcgagagagtctttagct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgaaagttgctacatactatcctcaatcaaaaagaaaaactcgagagagtctttagct 620
Query: 420 gagagcacaaagatggagtagctgcatatcagaacctatttccaatgaccaacaccaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagcacaaagatggagtagctgcatatcagaacctatttccaatgaccaacaccaaac 680
Query: 480 aaggaacaaattagaacattccaagtgctgatgagcactgttaataaaataggggccagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggaacaaattagaacattccaagtgctgatgagcactgttaataaaataggggccagg 740
Query: 540 gagccagctcagtcagcacag 560
|||||||||||||||||||||
Sbjct: 741 gagccagctcagtcagcacag 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space: 523050
Effective search space used: 523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
