TTTTNAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TGCGCGGAATTCACATCATTTCCATGATCTCTTTCTTTATCCCCTTAGAG
ATGTTGATTCTTCTTGTTTTTCTAAGAACTTCAGATATATCATGCTATTA
ATTGGAAATCTCCCAACATTTATATATATATACAACCTTCTTCTACCTTT
TCCCAAACATTTTGATATTGTATGCTTTCATTTTAATTCAATTCTAGAAA
TCTTTAATTTCCTTTTTGATTTCTTCCTTCACATGATTTTGGCTGAATAT
TGTGACATTTTGCTCCATGAATCTTTCTGCTTTATATCTTTTTATTGTTT
TGATAACTAGCCTTGATTCATGGTTATTAGATAGAATATTATTTGAATTT
TCCTTTATTTCTTTCATGTACTACTATGTAATCTACTTTGGGAAAAGTCT
GTGGGATACTGACAATAGGTATCCTTTTGTGATTAGGTGGAATATTCCAT
AGATAATCTGTTAGATCTCCATGATTCCTTATGTATTTTATTGCTAAAAA
TTTTTCTATTTATTGTTTTAAGTTGATTGTGGGGTATTGAATCCACCTAT
TACCACTATGCTGGGGCCAATGTGTAGTTTTAACTCTAATGGGGGTTCTT
TTATGAAACTGCATCCTCCTATGTTTGATGCATATTTGTTTATATTTGCA
CTATCCTCGTATTTATTTTTTA

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGAAGCAGAAATCATTCTCCCTAGA
CACTCAGATGAAGAATTGAACCTGGATATGAGTCTTCTGTTGGCCACTCA
GCCACAGGGAAATAACGTCAAGATCAGTACAAACCTCAGTTCCCTCCCTC
AGTACTTCTGTCATAGAAACAGGAGCTTGCATGGCATCATCCAGTGGACA
AAAGGGCTTAGACAAAAACATGACATGGTGTTGTTGTATTGGTAAGTGTA
CACCCCATATACTTCAGGGGTAGGGAAGTGGTTTTCCTCCATATGTGGGG
ATGAATCCAGGACTTGGAGTAGATGATTGGTAGATGGCTGAATCTAGGAT
TCCCAATAGATGCCTGAAATCATGGATAGTATCAACCACTGACTTCACAT
TGTGTTATTCCTGTGTGTTTATGATGAAGTTTAAGTTGTACATTGTGTGT
GGTGGAACTTAATAGCAGCAACTCAAGAATAAAGTGTAAACATTCATCCA
ATTATATTCTGGTTAGGTTTTTTTTTTTTTTTGTCAATATAATACAAACT
AGAGCCCTCTGGGGAGTGAAATCTCAACTAAAGAATTGCTTCTATCAAGG
CAGCCTGGGGGCATGTCTGTAAGTGATTTTCGTGAGTAATGATTGCCGTG
GCAGGATCCTGCCTAGTGTGGGGGGTGCCATCCCTGGGGAGGTGGGGCTG

Query= MSMg01no486_a17.g1 MSMg01no486_a17.g1 CHROMAT_FILE:
MSMg01no486_a17.g1 PHD_FILE: MSMg01no486_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:13 2005
         (510 letters)



>mm_chr1_42239854_42240763
          Length = 910

 Score =  955 bits (494), Expect = 0.0
 Identities = 506/510 (99%), Gaps = 2/510 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaagcagaaatcattctccctagacactcagatgaagaattgaacctggatatgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tctgaagcagaaatcattctccctagacactcagatgaagaattgaacctggatatgagt 460

                                                                       
Query: 61  cttc-tgttggccactcagccacagggaaataacgtcaagatcagtacaaacctcagttc 119
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 c-tcgtgttggccactcagccacagggaaataacgtcaagatcagtacaaacctcagttc 401

                                                                       
Query: 120 cctccctcagtacttctgtcatagaaacaggagcttgcatggcatcatccagtggacaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cctccctcagtacttctgtcatagaaacaggagcttgcatggcatcatccagtggacaaa 341

                                                                       
Query: 180 agggcttagacaaaaacatgacatggtgttgttgtattggtaagtgtacaccccatatac 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 340 agggtttagacaaaaacatgacatggtgttgttgtattggtaagtgtacaccccaaatac 281

                                                                       
Query: 240 ttcaggggtagggaagtggttttcctccatatgtggggatgaatccaggacttggagtag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttcaggggtagggaagtggttttcctccatatgtggggatgaatccaggacttggagtag 221

                                                                       
Query: 300 atgattggtagatggctgaatctaggattcccaatagatgcctgaaatcatggatagtat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atgattggtagatggctgaatctaggattcccaatagatgcctgaaatcatggatagtat 161

                                                                       
Query: 360 caaccactgacttcacattgtgttattcctgtgtgtttatgatgaagtttaagttgtaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 caaccactgacttcacattgtgttattcctgtgtgtttatgatgaagtttaagttgtaca 101

                                                                       
Query: 420 ttgtgtgtggtggaacttaatagcagcaactcaagaataaagtgtaaacattcatccaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ttgtgtgtggtggaacttaatagcagcaactcaagaataaagtgtaaacattcatccaat 41

                                         
Query: 480 tatattctggttaggttttttttttttttt 509
           ||||||||||||||||||||||||||||||
Sbjct: 40  tatattctggttaggttttttttttttttt 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)