NNNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACAGATATTTCTAAAAAAGGAAACCATGTCAAAGTCAA
ACCTAGAAGAACAATTAGCTTTGTGTCCTCTTTCAGGATCCCAGTGTCCT
TTTGCTTGCACCCCATCCTTCCCCATCGCCAACACTACCCCAACACCCTT
CCAAATGTTATACTTTATTCACACTTACAGCTGTTTGCATATAATTATAA
TTCTCTCATTATAATCCTTTTCAAAAAGATTGACTTTTTTAAATTTTATG
GATATGAATGTTTTGCCTGGTTGTATGTATGTGTACTGTGTGCATGTGTA
CTGTGTGTATGTGTACTGTGTGTATGTGTACTGTGTGCATGTGTACTGTG
TGTATGTGTACTGTGTGCATGTGTACTTTGTGTATGTGTACTGTGTGCAT
GTGTACTGTGTGCATGTGTACTGTGTGCATGTGTACTGTGTGCATGTGTA
CTGTGTGTATGTGTACTGTGTGCATGTGTACTGTGTGCATGTGTACTGTG
TGCATGTGTACTGTGTGCATGTGTACTGTGTGCATGTGTACTGTGTGCAC
GTGTACTGTGTGTATGTGTACTGTGTGCATGTGGGTACTAGGAAGGGAAG
GCAGGTTCTCTGTGGGAGTAACAAGTGTTCTCTGATTAGTCTCGCCAGCT
CTCCTATCTAAACTCTTAAGGCCACATTCCCTTGTAGGAAAGAGAA

NNNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAG
CCCCATTTTTTAATGGTGTTATTTGATTTTCTGGAGTTCAGCTTCTTGAG
CTGTTTATATATATTGGATATTAGTTCCCTATCAGATTTAGGGTTGGTAA
AGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACAGTGTCT
TTTGCCTTATACAAACAAAGAAAAGTAATTGTTGCTTCCTGTTATTTGGT
TATTAAAGTTGGGATTCTGTTCTTGAGGCTGTTTTCTTTTAGGTTTGTTG
AAGGATTACTTTCTTGCTTTTTCTAGGGTGTAGTTTCTGTCCTTGTGTTT
TCCCTTTATTATCCTTTGAAGGGATGGATTCGTGGAAAGATATTGTGTGA
ATTTGGTTTTATCTTGGAATACTTTGGTTTCTCCATCTATGGTAATTGAG
AGTTTGGCTGGGTATAGTAGCCTGGGCTGGCATTTGTGTTCTCTTAGGGT
CTGTATAACATCTGTCCAGGATCTTCTGGCATTCATAGTCTCTGGTGAGA
AGTCTGGTGTAATTCTAAAAGGCCTGCCTTTATATGTTGTTTGACCTTTT
TCCCTTACTGCTTTTAATACTCTATCTTTATTTAGTGCATTTGTTGCTCT
AAAACAACAAATTGTTCTATTATGTTTCGGGAGGAATTTC

Query= MSMg01no486_f04.b1 MSMg01no486_f04.b1 CHROMAT_FILE:
MSMg01no486_f04.b1 PHD_FILE: MSMg01no486_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:36 2005
         (684 letters)



>mm_chr1_186154052_186155135
          Length = 1084

 Score =  737 bits (381), Expect = 0.0
 Identities = 420/437 (96%), Gaps = 8/437 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagat----atttctaaaaaaggaaaccatgtcaaagtcaaacctagaagaac 60
           ||||||||||||    |    |||||||||||||||||||| ||||||||||||||||||
Sbjct: 433 gaattcacagataaaaa----taaaaaaggaaaccatgtcagagtcaaacctagaagaac 378

                                                                       
Query: 61  aattagctttgtgtcctctttcaggatcccagtgtccttttgcttgcaccccatccttcc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 377 aattagctttgtgtcctctttcaggaccccagtgtccttttgcttgcaccccatccttcc 318

                                                                       
Query: 121 ccatcgccaacactaccccaacacccttccaaatgttatactttattcacacttacagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccatcgccaacactaccccaacacccttccaaatgttatactttattcacacttacagct 258

                                                                       
Query: 181 gtttgcatataattataattctctcattataatccttttcaaaaagattgacttttttaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  
Sbjct: 257 gtttgcatataattataattctctcattataatccttttaaaaaagattgactttttttt 198

                                                                       
Query: 241 attttatggatatgaatgttttgcctggttgtatgtatgtgtactgtgtgcatgtgtact 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 attttatgtatatgaatgttttgcctggttgtatgtatgtgtactgtgtgcatgtgtact 138

                                                                       
Query: 301 gtgtgtatgtgtactgtgtgtatgtgtactgtgtgcatgtgtactgtgtgtatgtgtact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gtgtgtatgtgtactgtgtgtatgtgtactgtgtgcatgtgtactgtgtgtatgtgtact 78

                                                                       
Query: 361 gtgtgcatgtgtactttgtgtatgtgtactgtgtgcatgtgtactgtgtgcatgtgtact 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 77  gtgtgcatgtgtactttgtgtatgtgtactgtgtgcctgtgtactgtgtgcctgtgtact 18

                            
Query: 421 gtgtgcatgtgtactgt 437
           ||||| |||||||||||
Sbjct: 17  gtgtgtatgtgtactgt 1



 Score =  110 bits (57), Expect = 3e-28
 Identities = 63/65 (96%)
 Strand = Plus / Minus

                                                                       
Query: 517 atgtgtactgtgtgcatgtgtactgtgtgcacgtgtactgtgtgtatgtgtactgtgtgc 576
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 161 atgtgtactgtgtgcatgtgtactgtgtgtatgtgtactgtgtgtatgtgtactgtgtgc 102

                
Query: 577 atgtg 581
           |||||
Sbjct: 101 atgtg 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 120
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 2
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)