Query= MSMg01no486_f09.b1 MSMg01no486_f09.b1 CHROMAT_FILE:
MSMg01no486_f09.b1 PHD_FILE: MSMg01no486_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:37 2005
(584 letters)
>mm_chr1_109610462_109611445
Length = 984
Score = 1093 bits (565), Expect = 0.0
Identities = 577/581 (99%), Gaps = 2/581 (0%)
Strand = Plus / Minus
Query: 5 gaattcactttggttgctagtttattataaaaaacctgtgaacactatcttgtttgtaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattcactttggttgctagtttattataaaaaacctgtgaacactatcttgtttgtaca 725
Query: 65 gagcttacgcacagtacaacactagctttaaactccaaatgcagttatagg-aaaaaaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 724 gagcttacgcacagtacaacactagctttaaactccaaatgcagttataggaaaaaaaaa 665
Query: 124 aaaaaaccttaactaacgtattaaacgtttatatgtattgcattatctttcatagagagt 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 664 aaaaaaccttaactaacgt-ttaaacgtttatatgtattgcattatctttcatggagagt 606
Query: 184 tctgattaatgaactcaagacctgtgcctttattaaaaaacatgttataaatcattgatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tctgattaatgaactcaagacctgtgcctttattaaaaaacatgttataaatcattgatg 546
Query: 244 tttcagtaaataattgtctgaattgcttgcttactatttgctgactctactccctacaaa 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tttcagtacataattgtctgaattgcttgcttactatttgctgactctactccctacaaa 486
Query: 304 gatgagtcagtcacccaggcaaatatctccctcagcgtttgtgtttgttgtccacatttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatgagtcagtcacccaggcaaatatctccctcagcgtttgtgtttgttgtccacatttg 426
Query: 364 aaagggtcaagagtgcagaaatttaagaatggttaaagtgatatgcaacattctcttaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaagggtcaagagtgcagaaatttaagaatggttaaagtgatatgcaacattctcttaat 366
Query: 424 taaaagtaaaggaacatttaatattttattaaatcaaaaccacaaaatggaatttttaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 taaaagtaaaggaacatttaatattttattaaatcaaaaccacaaaatggaatttttaag 306
Query: 484 ctcccataaagatttttttctatgactgtgtagtttccattagtaatgaatatttggact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcccataaagatttttttctatgactgtgtagtttccattagtaatgaatatttggact 246
Query: 544 tgaactaatattacaattcaaataatagtatttaatttttc 584
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgaactaatattacaattcaaataatagtatttaatttttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_f09.g1 MSMg01no486_f09.g1 CHROMAT_FILE:
MSMg01no486_f09.g1 PHD_FILE: MSMg01no486_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:37 2005
(322 letters)
>mm_chr1_109530122_109530843
Length = 722
Score = 576 bits (298), Expect = e-169
Identities = 316/322 (98%)
Strand = Plus / Plus
Query: 1 aaggtgggttgaaactcagtggggccttcccattctcagggtggaaggggaggaaggaag 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aaggtgggttgaaactcagtggggccttctcattctcagggtggaaggggaggaaggaag 260
Query: 61 aggagaagggctctgtgcagggagactgggaggagtgggagcagtgatcgggatataaag 120
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagaaaggttctgtgcagggagactgggaggagtgggagcagtgatcgggatataaag 320
Query: 121 tgagtaaataaaccaattaatgggaaaaagaaatattgatcttcagaattttgtatataa 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtaaataaaccaattaatgggaagaagaaatattgatcttcagaattttgtatataa 380
Query: 181 gagtcacctaagttcacatgtaattatttttcccatattttagaattatacctgctatac 240
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 381 gagtcacctaagttcacatgtaattattcttcccatattttagaattataactgctatac 440
Query: 241 aatttttaatctgaattttaaaattctctgaagtagtcagtttcaatttccctttagtac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttttaatctgaattttaaaattctctgaagtagtcagtttcaatttccctttagtac 500
Query: 301 tttatattctgaattaatattg 322
||||||||||||||||||||||
Sbjct: 501 tttatattctgaattaatattg 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
