Query= MSMg01no486_j06.b1 MSMg01no486_j06.b1 CHROMAT_FILE:
MSMg01no486_j06.b1 PHD_FILE: MSMg01no486_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:55 2005
(471 letters)
>mm_chr1_187326672_187327542
Length = 871
Score = 783 bits (405), Expect = 0.0
Identities = 460/491 (93%), Gaps = 29/491 (5%)
Strand = Plus / Plus
Query: 2 tttttttgtttttttgtttttgtttttttgttttttgtttttt-ttttttgttttttcga 60
||||||||||| ||| ||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct: 189 tttttttgtttgttt-ttttt-ttttttt-ttttttgttttttgttttttgttttttcga 245
Query: 61 gacaggggtttctctgtgtagccctggctgtcctggaactcactttgtagaccaggctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gacaggggtttctctgtgtagccctggctgtcctggaactcactttgtagaccaggctga 305
Query: 121 cctcaaactcagaaatctgcctgtctctgcctcccaagtgctgggattaaaggtgtgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cctcaaactcagaaatctgcctgtctctgcctcccaagtgctgggattaaaggtgtgtgc 365
Query: 181 caccaccgcccagctcttcttcttctt---cttcttcttcttcttcttct---tcttctt 234
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 366 caccaccgcccagctcttcttcttctttttcttcttcttcttcttcttctccttcttctt 425
Query: 235 cttcttcttctat----------ttcttcttcttcttcttcttcttcttcttcttcttct 284
||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 426 cttcttcttct-tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct 484
Query: 285 tcttcttcttcttcttcttcttttttaaccccgtgaagttatagattcacttggg----c 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 485 tcttcttcttcttcttcttcttttttaaccccgtgaagttatagattcacttgggttgac 544
Query: 341 cccccagcattatctttaatatttaattttttcacgacccgccttcttcccattctcctc 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 a----agcattatctttaatatttaattttttcacgacccgccttcttcccattctcctc 600
Query: 401 tcttctcccctcgactgaaccttgtctcccagccatttccacgtctttcctttttgtgcc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcttctcccctcgactgaaccttgtctcccagccatttccacgtctttcctttttgtgcc 660
Query: 461 cctctgcatga 471
|||||||||||
Sbjct: 661 cctctgcatga 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 191
Number of extensions: 50
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_j06.g1 MSMg01no486_j06.g1 CHROMAT_FILE:
MSMg01no486_j06.g1 PHD_FILE: MSMg01no486_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:55 2005
(391 letters)
>mm_chr1_187494968_187495758
Length = 791
Score = 683 bits (353), Expect = 0.0
Identities = 379/391 (96%), Gaps = 6/391 (1%)
Strand = Plus / Minus
Query: 1 aaatacagacagacacacacacacagagagacagacagacacagagacagaaacagagac 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaatacagacagacacacacacagagagagacagacagacacagagacagaaacagagac 613
Query: 61 agagacagaaacagagacagagagagaaagaggggaggagtataactcccgtctgagaaa 120
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 612 agag------acagagacagagagagaaagagggcaggagtataactcccgtctgagaaa 559
Query: 121 accatgatagaaacctgagattttcttcttgcctcagaaggtttgaatgtctcccatcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 accatgatagaaacctgagattttcttcttgcctcagaaggtttgaatgtctcccatcct 499
Query: 181 gctcctctcctagtttggtaagatgtggactcattcctttgcaaagcagaaacaaacgtt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gctcctctcctggtttggtaagatgtggactcattcctttgcaaagcagaaacaaacgtt 439
Query: 241 aactgcctgatgattggccatgaacctgggcgggtaaagctaggtagctgtctgctcttc 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 aactgcctgatgattggccatgaacctgggtgggtaaagctaggtagctgtctgctcttc 379
Query: 301 cacgtaggaactcaaaatggggggaggggcaggtggagagagagaagggacttcctgttg 360
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cacataggaactcagaatggggggaggggcaggtggagagagagaagggacttcctgttg 319
Query: 361 ctcagggcacaggagtcacaaaatgctctca 391
|||||||||||||||||||||||||||||||
Sbjct: 318 ctcagggcacaggagtcacaaaatgctctca 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
