TTTAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATC
CGCGGAATTCCACCTACATTTCAACCTTGCTGTTACTCTGCTGCTCTTCA
AAGCAGATATCACTGCTCCTGACCCTGGAGAACAGTAAGGAGTTCTCAGA
AGCACCTTTGTTAATCAAGAAATGTAGACAGAATGCTCTGTCCTGCAAGC
GGATCAGTCTACAGGGCTGAATCAAACAGTGGTCATCAACAGGCAATACC
TCTCATCGGCTGTAGAACTAGCATTTGTCATTTTGAAGTAGGTGTACTAG
TGAGCACCTGCTTTAGTTGTCCATGTTTAGCTTCCATCCTAACTTCCTCC
CCATTCCAGAAGGATAGTCTTCTGATAAGGAAGTCTCCATGGTTGGAACA
TTTCTTTTGGATCTTAAGAACACGCTGCCATTTCCTTTGCTAGCCCAAGC
TTCCAGGCAGAACATCTGCTGTGAACCCAACTCTTCTCTTCATCATATGT
CTTTTCTGTCTGGTAGCTTCTAACGTGTTAGACTTGTCCGTATCTCTCCA
AATTGAATTTTGCTGTATTTTGGTGTGAGTTTCCCTATGCATGTCTTTTT
GGATGCTAAGTTACTTCTAGAATGTGTATGTTGGTGACGTCTTTACCCAG
ATCCCAGGAGGTTTAGTCATTGGTTCTTTGAATCACATTAATTTTTGCCC
TTTTGAAGTGCATTGCTGTGTGAAATCCTCCTN

TTTCCGTCCTAAGTGCGCCAGCTACCCGACTGTCTTCTCGTTTCCTCCTC
CATCCGTCCCATAACGAGAAGCGATCTATCCCCTACCAAGATTCTCCCTA
TCTCCACTCTGCGTGAGGCGACGCAGCGTGTCATGATTGATGGCATTGAA
GCGGGCAACGCTGTGCGTATCATGAGCGGGTACTAGATATTGATATGGTA
TACGGGGTGTTAATGTAGATGGAGCCACGTTGCCGCGCTATTGACGTGTT
CATATCTCTGCTATATTCACCTTACTATTCCTACTAGCATGCCGACGATT
GCTTGGCGGCGTCGTAGCGGCATTCTATTTTCAAACTACCACCGTATGAT
TATTAAGGTATTGATTTTGTTATTTATTCATACCTCAATACCTTCCGTTA
GTACTATACGTTACGCGACTATTTAATGACCGCCGCCGCNCCCCGCGTTT
TTTTCGTGTGTTGTGGACCGATGCTAATCGCCCTTTCCTACGCTCCTCGT
TCTTTATCTCTCCGATTTGGATTATTCGTACCGCTGGCCGATAGTGGGCG
CCGAGAGGATAGAACGCTACGATAATAGTGATAGGGGAAATCATGTGTAT
GAGGGTACCACCGGATAACGCGTATGTTGTTATCGTTGCTCAATTCCAAG
CCCCACTACATATGGCAGTCATCTTAGTAGAATGTGCTACACCTCAGTCT
CAAATCGGTTGAATTAAGGAGTGAAGACGTCTGGTGTCGATACACTGCCA
CATGTAGAGTTGTGAGGTCCGCATTGTCACTNTGTCGCTCGTGTTATAGA
TAAAGCCCACATAGCATTAACGGCGTACACCTCGCGCCTCGGGCACTATC
CTTCTCTGCTATGTTATGTTTCAGCCCTGATATCTTGATGTATAGGTTAT
CCTCCTATCAGGCATGCACGGAGTCATACCGTCACCGCTTATTTCCACGG
TATGTTGCGACGTGATAACGCGGAGGTATGATTTAGTTGTATATCGGGTC
AGACAATATCCCGATATAATATTTACAGCGCCGCTACGCCACGTATTAAA
CAGATCTTCACGCCACGATATCGGCGTCGCTGTTCTTGCGATGGAGCCAC
TGTTATATTCGCTTCGCTCGTGTGACACGCGGCGAGG

Query= MSMg01no486_j09.b1 MSMg01no486_j09.b1 CHROMAT_FILE:
MSMg01no486_j09.b1 PHD_FILE: MSMg01no486_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:56 2005
         (572 letters)



>mm_chr1_12272469_12273440
          Length = 972

 Score = 1025 bits (530), Expect = 0.0
 Identities = 557/566 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccacctacatttcaaccttgctgttactctgctgctcttcaaagcagatatcact 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 772 gaattccacctacatttcaaccttgctgttactctgctgctcttcaaagcagacatcact 713

                                                                       
Query: 67  gctcctgaccctggagaacagtaaggagttctcagaagcacctttgttaatcaagaaatg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gctcctgaccctggagaacagtaaggagttctcagaagcacctttgttaatcaagaaatg 653

                                                                       
Query: 127 tagacagaatgctctgtcctgcaagcggatcagtctacagggctgaatcaaacagtggtc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tagacagaatgctctgtcctgcaagcggatcagtctacagggctgaatcaaacagtggtc 593

                                                                       
Query: 187 atcaacaggcaatacctctcatcggctgtagaactagcatttgtcattttgaagtaggtg 246
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 592 atcaacaggcaatacctctcattggctgtagaactagcatttgtcattttgaagtaggtg 533

                                                                       
Query: 247 tactagtgagcacctgctttagttgtccatgtttagcttccatcctaacttcctccccat 306
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tactagcgagcacctgcttttgttgtccatgtttagcttccatcctaacttcctccccat 473

                                                                       
Query: 307 tccagaaggatagtcttctgataaggaagtctccatggttggaacatttcttttggatct 366
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 472 tccagaaggatggtcttctgataaggaagtctccatggatggaacatttcttttggatct 413

                                                                       
Query: 367 taagaacacgctgccatttcctttgctagcccaagcttccaggcagaacatctgctgtga 426
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 taagaacacgttgccatttcctttgctagcccaagcttccaggcagaacatctgctgtga 353

                                                                       
Query: 427 acccaactcttctcttcatcatatgtcttttctgtctggtagcttctaacgtgttagact 486
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 352 accccactcttctcttcatcatatgtcttttctgtctggcagcttctaacgtgttagact 293

                                                                       
Query: 487 tgtccgtatctctccaaattgaattttgctgtattttggtgtgagtttccctatgcatgt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgtccgtatctctccaaattgaattttgctgtattttggtgtgagtttccctatgcatgt 233

                                     
Query: 547 ctttttggatgctaagttacttctag 572
           ||||||||||||||||||||||||||
Sbjct: 232 ctttttggatgctaagttacttctag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)