NNNGGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAATGAGATGTACACTAGGAGAAATACTCACAAAAATCT
AATGTGACCCATAGAAGCAAACTAAGTTGATGAAGCCGTTTTGTATCAAC
CAATTACTCTTTCACCCTATTTAGAAATTATAGGTCTGTAATATAAAGAT
ATTAGAACATTTAACAATCCTTGTCCAGATATAAAAGCATATAATTCATA
GTGAACAATTGGTTCTGTAAACACTGAAAAAACTTGCCAAGATCAACTCC
TAAAGAACCAATATGAGTACCTGGAGTCAGTTAGTTCTCTCCGAAGACTA
GCATCTTACTAAGGCTAAGTGTCAGCATCCTGTTGGAGATACTGACACAG
CTGACAGAGGAAAAGAGTATGTGTGCTTACTGGTCCAATGAGCACAATCC
ATTGTGATACAACTTGTCATAGGCAAAGTTCATACTTAAGAACCCACAAT
TGGACTGGAGAGATGGCTCAGCGGTTAGGAGTACTGACTGCTCTTCCAGA
GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTTACAACCATCTGA
TGTGGGCATCAGATGCTGTCTTCTGGTGTGTCTAAAGACAGTGACAGTGT
ACCCACATACATGAAATAAATAAGTAGATCTTAAAAAAAAAAGTTGGGCA
TGGTTGTGCATGCCTATAATCCCCGCATTTGAGAGGCAGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAG
AAGCACCTGAAAAAATGTTCAGCGTCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGATTGGCTAAGATCA
AAAATTCAGGTGACAGCAGATCCTGGGAAGGATGTGGAGAAAGAGGAACA
CTCCGACATTGTTGGTGGGATTATAAGCTTGTACAACCACTCTGGAAATC
AGTTTGGCAGTTCCTCAGAAATTTGGACATAGTACTGCAGGAGAATCCCG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAG
GACACATTCTCCACTATGTTCGTAGCAGCTTTATTTATAATAGCCAGAAG
CTGGAAAGATCCCAGATGCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCAGCCATTAAAAAGAACGAATTTA
TGAAATTCCTAGGCAAATGGATGGACACTCAGATATCATCCTGAGTGAGG
TAACCCAATCACAAAAGAACTCACATGATATGCACTCACTGATAAGTGGA
TATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATGCAATTTGCTCA
AAGCATGAAACTCAAGAAGAATGAAGACCAGAGTGTGGACACTTTTCCCC
TTCTTAGAATTGGGAACAAAACACCCATGGAG

Query= MSMg01no486_m24.b1 MSMg01no486_m24.b1 CHROMAT_FILE:
MSMg01no486_m24.b1 PHD_FILE: MSMg01no486_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:13 2005
         (678 letters)



>mm_chr1_165658357_165659434
          Length = 1078

 Score = 1216 bits (629), Expect = 0.0
 Identities = 644/649 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgagatgtacactaggagaaatactcacaaaaatctaatgtgacccatagaa 64
           |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattcaatgagctggagactaggagaaatactcacaaaaatctaatgtgacccatagaa 590

                                                                       
Query: 65  gcaaactaagttgatgaagccgttttgtatcaaccaattactctttcaccctatttagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gcaaactaagttgatgaagccgttttgtatcaaccaattactctttcaccctatttagaa 530

                                                                       
Query: 125 attataggtctgtaatataaagatattagaacatttaacaatccttgtccagatataaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 attataggtctgtaatataaagatattagaacatttaacaatccttgtccagatataaaa 470

                                                                       
Query: 185 gcatataattcatagtgaacaattggttctgtaaacactgaaaaaacttgccaagatcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gcatataattcatagtgaacaattggttctgtaaacactgaaaaaacttgccaagatcaa 410

                                                                       
Query: 245 ctcctaaagaaccaatatgagtacctggagtcagttagttctctccgaagactagcatct 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctgctaaagaaccaatatgagtacctggagtcagttagttctctccgaagactagcatct 350

                                                                       
Query: 305 tactaaggctaagtgtcagcatcctgttggagatactgacacagctgacagaggaaaaga 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 349 tactaaggctaagtgtcagcatcctgttggagatactgacacagttgacagaggaaaaga 290

                                                                       
Query: 365 gtatgtgtgcttactggtccaatgagcacaatccattgtgatacaacttgtcataggcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtatgtgtgcttactggtccaatgagcacaatccattgtgatacaacttgtcataggcaa 230

                                                                       
Query: 425 agttcatacttaagaacccacaattggactggagagatggctcagcggttaggagtactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 agttcatacttaagaacccacaattggactggagagatggctcagcggttaggagtactg 170

                                                                       
Query: 485 actgctcttccagaggtcctgagttcaattcccagcaaccacatggtgacttacaaccat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 actgctcttccagaggtcctgagttcaattcccagcaaccacatggtgacttacaaccat 110

                                                                       
Query: 545 ctgatgtgggcatcagatgctgtcttctggtgtgtctaaagacagtgacagtgtacccac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctgatgtgggcatcagatgctgtcttctggtgtgtctaaagacagtgacagtgtacccac 50

                                                            
Query: 605 atacatgaaataaataagtagatcttaaaaaaaaaagttgggcatggtt 653
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  atacatgaaataaataagtagatcttaaaaaaaaaagttgggcatggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)