BAC Information

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BAC

Clone NameMSMg01-486O17
Chromosome1 (Build37)
Map Location 100,273,395 - 100,273,940
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486O17.T7 (MSMg01no486_o17.b1)MSMg01-486O17.TJ (MSMg01no486_o17.g1)
ACCAG566008AG566009
length743768
length of high quality
(start - end)
693 (51 - 743)637 (69 - 705)
definitionCHROMAT_FILE: MSMg01no486_o17.b1 PHD_FILE: MSMg01no486_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:22 2005CHROMAT_FILE: MSMg01no486_o17.g1 PHD_FILE: MSMg01no486_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGTAGCATTTTATTATCTGACAAAATAGACCTCANACC
AAAACAGGAGAGATATAGGACATTATATATTCTTCAAAGGGAAAAATATC
TACCTAGAGCAGTGGTTCTCAACCTTCCTGGTGCAGAGACCCTTTAATAC
AGTTCCTCATGCTGTGGTGAACCCCAATCATAGCATCATTTTATTGCTAT
TTCATAACTATAAGTTCACTACTGTTATGAATCATATTGTAAATATCTGT
GTTTTCCACTGGTTGAGGGTGACCTCTGTGAAAGCATTGTTTGACTGCCA
AGGGGATTAAGACCCACAGGCTGAGAACCTCTGACCTAGAGGCTATTATA
ATTCTAAACACTTATGCACCAAACACTGGGGTGCTGAAGTTCATAAAAGA
AACACTATTAAAACTAAAATGATATATTGACCCGCACACAGTGATAGCGG
CCAACTTTAATACCCTACTTTCACCAAAAAACAGGGTACACAGACAAAAA
TAAAACAGCAAAATGCTCAAACTACATCATAAACCTAACAGATATTTACA
GAATATTTTACCCAAACACAAATTAATATGTCTTCTTCTCAGCAACTCAT
GGAATTTTCTCCTGAATTGGTTACATATTTGGACACATCACAAGTGTTGA
CAAATACAAGAAAGTAGAGGGAATATCCTGCATCCTATCTGAC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAGACGTGAGAGTGATCTTGTCTTTGACTCT
TTTGAACCCTGTAGGACACTTCTCTTCCTACTGGGTTGCCTTATCCAGTG
TTGATGTGATAGTATGTGCATGATCATTTAGGTAGCTTGTCATGCTGTGT
TTGGTTGATGTCCTGGGAGGCCTGCTTGTTTTCTGAGGAGAGACAGAAGA
GGAGTGTTTCTGTGGGAGGCAAAGTGTGGAGGGGGAAGATTGGGTGTAGG
AAAAACTACAGTTGCAATTTTAAAAAATTGAAAGGAAATTATAAAAATTT
AAAAAAAATCATTCAGTCCTACTTTCTCTTTTATTTCAGATCGCAACTCT
TTATATATTTCTTCATTTGGTTGCTTTTATGTTGCTTATAATCATTTCCT
TATATAACCACAAAAAACCATGCCTCTACTATTCATTGCTCAAATTCCAG
CATGTAAAGTGTCACACAATTCCTATCACATAGTAGACAACTAGATACTT
GTCAATTTATACATCCATTAATGTTTTCATTAATTAGACTGAAAAATAAG
AGAAAGCTCATAATGAGCACAGTTCTTTTAAAATAGTGTTTAATCAAATT
TTAACTCCTATTCCTTGAGTGAATGGAGACTATATATCAATAGAGACATG
TGCACACAAATACACATACACAAATATTTATCACCATCAGCCTAACAAGC
CATTAAAATAAAACATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_o17.g1 MSMg01no486_o17.g1 CHROMAT_FILE:
MSMg01no486_o17.g1 PHD_FILE: MSMg01no486_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:22 2005
         (637 letters)



>mm_chr1_100272904_100273940
          Length = 1037

 Score = 1027 bits (531), Expect = 0.0
 Identities = 543/547 (99%), Gaps = 1/547 (0%)
 Strand = Plus / Minus

                                                                        
Query: 91   atagtatgtgcatgatcatttaggtagcttgtcatgctgtgtttggttgatgtcctggga 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 atagtatgtgcatgatcatttaggtagcttgtcatgctgtgtttggttgatgtcctggga 978

                                                                        
Query: 151  ggcctgcttgttttctgaggagagacagaagaggagtgtttctgtgggaggcaaagtgtg 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  ggcctgcttgttttctgaggagagacagaagaggagtgtttctgtgggaggcaaagtgtg 918

                                                                        
Query: 211  gagggggaagattgggtgtaggaaaaactacagttgcaattttaaaaaattgaaaggaaa 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917  gagggggaagattgggtgtaggaaaaactacagttgcaattttaaaaaattgaaaggaaa 858

                                                                        
Query: 271  ttataaaaatttaaaaaaaatcattcagtcctactttctcttttatttcagatcgcaact 330
            |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 857  ttataaaaattt-agaaaaatcattcagtcctactttctcttttatttcagatcacaact 799

                                                                        
Query: 331  ctttatatatttcttcatttggttgcttttatgttgcttataatcatttccttatataac 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798  ctttatatatttcttcatttggttgcttttatgttgcttataatcatttccttatataac 739

                                                                        
Query: 391  cacaaaaaaccatgcctctactattcattgctcaaattccagcatgtaaagtgtcacaca 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738  cacaaaaaaccatgcctctactattcattgctcaaattccagcatgtaaagtgtcacaca 679

                                                                        
Query: 451  attcctatcacatagtagacaactagatacttgtcaatttatacatccattaatgttttc 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678  attcctatcacatagtagacaactagatacttgtcaatttatacatccattaatgttttc 619

                                                                        
Query: 511  attaattagactgaaaaataagagaaagctcataatgagcacagttcttttaaaatagtg 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618  attaattagactgaaaaataagagaaagctcataatgagcacagttcttttaaaatagtg 559

                                                                        
Query: 571  tttaatcaaattttaactcctattccttgagtgaatggagactatatatcaatagagaca 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 558  tttaatcaaattttaactcctattccttgagtgaatggagactatatatcaatagagacg 499

                   
Query: 631  tgtgcac 637
            |||||||
Sbjct: 498  tgtgcac 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)